Gene detail

Gene detail information of Glyur000013s00003252

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G12250.1	beta-6 tubulin
NR	XP_003624927.1	Tubulin beta chain [Medicago truncatula]
Swissprot	tr\|P45960\|TBB4_ORYSJ	Tubulin beta-4 chain
trEMBL	tr\|G7L5V0\|G7L5V0_MEDTR	Tubulin beta-1 chain {ECO:0000313\|EMBL:AES81144.1}

Sequence

Transcript Sequence

>Glyur000013s00003252.1
GGGAAAAAATGAGAGAAATCCTTCATGTTCAGGGAGGGCAATGTGGGAACCAGATCGGTTCCAAGTTCTGGGAAGTGGTGTGCGACGAGCACGGCATAGATCCGACGGGTAGGTATGTCGGTAACTCAGATCTGCAGCTGGAGCGCGTGAACGTCTACTACAACGAGGCATCGTGCGGAAGGTTCGTCCCACGCGCCGTCCTCATGGACCTTGAGCCAGGCACCATGGACAGTGTCCGCACCGGTCCCTATGGTCAGATCTTCCGCCCCGACAACTTCGTCTTCGGACAGTCCGGCGCCGGCAACAACTGGGCGAAAGGACATTACACCGAAGGCGCTGAGCTCATTGACTCTGTTCTCGATGTCATCAGGGAGGAGTACCCTGACAGGATGATGCTGACATTCTCCGTGTTCCCTTCCCCTAAGGTCTCTGACACTGTCGTGGAGCCTTACAATGCCACTCTCTCTGTTCACCAGTTGGTGGAGAATGCCGATGAGTGCATGGTTCTCGACAATGAGGCACTCTATGATATCTGTTTCAGGACCCTCAAGTTGACCACTCCTAGCTTTGGTGATTTGAACCACTTGATCTCGGCAACCATGAGTGGGGTAACTTGCTGCCTTCGTTTCCCTGGTCAACTCAACTCTGACCTCCGGAAACTTGCTGTGAATCTCATCCCATTCCCTCGTCTTCACTTCTTCATGGTTGGCTTTGCACCTCTCACCTCCCGTGGCTCTCAGCAGTACCGAGCACTGACGGTTCCAGAGCTGACCCAGCAAATGTGGGATGCCAAAAACATGATGTGTGCTGCTGATCCCAGGCACGGACGCTACCTCACCGCATCTGCCATGTTCAGGGGTAAGATGAGCACCAAAGAAGTGGATGAGCAGATGATTAATGTGCAGAACAAGAACTCTTCCTACTTCGTTGAGTGGATCCCCAATAACGTTAAGTCCAGTGTATGTGACATTGCTCCCAGGGGTCTTTCCATGGCCTCCACCTTCATTGGCAACTCAACCTCCATTCAGGAAATGTTCAGGAGGGTGAGTGAGCAATTCACAGCCATGTTTAGGAGGAAGGCTTTCTTGCACTGGTACACTGGGGAAGGCATGGATGAAATGGAATTCACAGAAGCAGAGAGCAACATGAATGACCTCGTTTCTGAATACCAGCAGTACCAGGATGCCACTGCTGATGAGGAAGGGGAATATGAGGACGAGGAAGAGGATCAGGAGCACGTCTACGAATAAAAGAAATTACTACACTGATGATGGCTTCTGCTTATTGCATTATGCGATATGATGCGTAAGTGTGTTTTGCCCTCCTTTGTGAGGATTGTAATTAGTATGCTTTGAGGGATTCTGGTGATGAGCCGGATGTGGAGAATGGAAATGCCTATTTTCTTTCTTTATGATATCGCGGGCAAAGGAGGCTAATGGTAGTTGGAGTTTGGGTACGTGTTTTAAAGTAGTCATGCGGCACCTATCTGTTTGTTTTTATATACTGGTTTACTTCGTTTTCTCTATCTGGTACATTGGATCATGTTTCCTTAATATCTCGTTATTCTTATGCATGCCCTTTTTTTTTTCTTCTTAAATTGGATCCTTGAAATGTCTCTTGTTATTCAGAGAAAAGTCTTGCCTCGTCTTTCTGGCTGAACAACCTTAAACAGCGCATATTAATTGATATTGTGTTAGTATATTACGGACACCGTGTGGTTCAGAAGAGACTACTGGTCGAATCTTACTATGCTTTTGGATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	505249	508275	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0051258 protein polymerization

cellular_component

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005200 structural constituent of cytoskeleton

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003252.1	PF00091.20	Tubulin	3	123	2.30E-31
Glyur000013s00003252.1	PF03953.12	Tubulin_C	226	347	4.60E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	558.420
SRR1783600	control	561.423
SRR1783602	moderate drought stress	299.586
SRR1811619	moderate drought stress	297.902

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	238.204
DRR006520	Root Summer glycyrrhizin high producing strain	235.706
DRR006521	Root Winter glycyrrhizin high producing strain	20.373
DRR006522	Root Winter glycyrrhizin high producing strain	19.737
DRR006523	Root Summer glycyrrhizin low producing strain	89.677
DRR006524	Root Summer glycyrrhizin low producing strain	89.493
DRR006525	Leaf Summer glycyrrhizin high producing strain	124.710
DRR006526	Leaf Summer glycyrrhizin high producing strain	123.760

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	453.669
SRR2868004	Drought Stress (root)	221.047
SRR2967015	Control (root)	246.250

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	79.455
SRR9715740	Leaf	44.888
SRR9715741	Leaf	37.566
SRR9715739	Root	362.947
SRR9715742	Root	170.035
SRR9715743	Root	212.476

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	158.718
SRR8749028	MeJA induced 9h	62.340
SRR8749029	MeJA induced 9h	63.551
SRR8749030	Uninduced	3.354
SRR8749031	Uninduced	0.348
SRR8749032	Uninduced	4.679

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	407.916
SRR8400027	Control - Root	503.037