Gene detail

Gene detail information of Glyur000013s00003250

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05140.1	1.00E-87	Transcription elongation factor (TFIIS) family protein
NR	XP_004493376.1	0	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b-like isoform X6 [Cicer arietinum]
Swissprot	tr\|Q9FHK9\|MD26B_ARATH	3.00E-125	Probable mediator of RNA polymerase II transcription subunit 26b
trEMBL	tr\|I1N8P6\|I1N8P6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G30780.1}

Sequence

Transcript Sequence

>Glyur000013s00003250.1
CTTCTCTTTTTCTAAACTTTCTCAAGACCATTGTGCGTGTCTGATCAAAGTCAAAACACACCCCCAATTCAGAGCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAAGGAGTGGTTTTTGAACAAAAACCAAGTTTCACACAGAGGCACCCGGTATTTTTTGCCTCAACAGTGCAACATTACGTAGACACACATACACGAGACTATTACAAACTACATAGGGCTCTCGGATCGAAGGCAACAACAAAGACAGTGCTATCTACCTATCTTCTCACGACCCCATGAAAAAAAAATTCCAATTTTGAATCGTGGGTGATTGATTGATTTTGGATTCTGTTTCTGGATCTAGCTGGATTGATCTGGGTCTGTGGTTTTACCNCTCTGGTGTTCATTTTTTGGGGTTGTTTGGAAATGACCATGAAGTCTTCTGGGTCACTGGATCAGTGGAGGAATTACTTTCGTTCAGCGAATTCTGATATATTTGACATAATTGACCATGCGATCATGGTGGCCGCATCTGATTGCCCCAAGGAGTTCAGGTTGAGAAGGGATGGGATTGCTGAGAGGTTGTTCTCTTGCAAGTTGACTCGTTGTTTGGGGTGTGACCGAGTTGAGTTGGTTGTGTCTGAGGATGATGATGATGATGATGAAGGAGGTTGCAAGAGTGGTTTTGATAGAGATGGGGTTGAGTTTGAAGCTGGGGCAAGCAAAGAGAGCAAGGTCAATGGTGGCAGTAGAGACGATCGTGGAGAGATGGATGTGAACAAGGTTGTTAGCAATTATAGCTTTGGGGAAGCTGAGGCTTTGACTGATGAGATTGAAGAAGAGTCTCAGTATGTTGCTGAGGTTTTGAGGATTAGAGACATTCTGCATAACCGTGAAGAAGAGTCTGACTCTGTGTTGTTTGAGTCATTGAGGAGGCTCCAGCTGATGGAACTCTCTGTGGATCTTCTAAAGGCAACTGAAATTGGAAAGGCTGTCAATCCTCTCCGAAAGCATGGATCAAATGATGTTCGTCAACTCGCACGGACTCTTATCAATGGCTGGAAAGTGATGGTAGATGAGTGGGTCAAGGCTACAACAACCACAGCTATTGCAGCTTCAGAAGGCACACCAGATTCAGTAAATCCATCTGTGGTTGATGATGAAGAAGAAGAAGAAGGACTTCCATCACCTCCTTTGGATGAAGGGGCTTTCTTTGTTGCTCCAACTGGTTCAATAGAACTCTCACAGTTCTTCGATGGCATGGATGATGACGGAAATCCTAGACAGAGTGGGCAATTCAACAGGAACCGTGAAAATGGAAGAAAGCCAGCTTTGAACAGTCATATCACAGAAAGGAGGAAATCGCAGGCTTCCAATGAAACAACCAACTCTACCAAGGACAATAAGGGTCAGCAAGCAAAGAAAAACGAGGCTGCTGTGAGGATAAATAAACCAGTAACCGCTGATTCTGGCCCCGGCAGACCACCAAAATCAAATATTCAGCGAAAAGTAAATACAGAGCCAAAGATGCAGCAAAAAGTAGAGAACAGTGCAGTCACAAGGAGGCCTCCCATTGGTCAGCAAGATAAATCCAAGTGTTCAGATGATGCTGCAGTCCAAGTGAAGCTAGAAGCCACTAAGAGGAAACTTCAAAACAGTTATCAACAAGTTGCAAATGCTAAGAAGCAACGGACNATTCAAGTTATGGAAATAAATGATCTTCCCAAGCAAGGGGCCGTCCACCGAAATCCAAATTTCAAACCCGGATATCACAATAGGCAATGGGCTAACGCGCGAAGATAGAGCTGCTGTTCATTCCTTGTAGGACTTGCAGATTTTGCAGCATTTCCTAGCTTCTCTTTCCAAAGGTGAAGGAAGAAGAAGAAGAGTGAGTGATAACTTGGTTTTGCCAGCCATTCAGTGGATTGAAGATTGATCCCCCTTCTTGACTATATATAGAAAAATAATAACAAGTCCATTCACCATTCTTACATGGATATCATAGAGCTATTTCTGATTGAGGGAGGGAAGTAAACTTTGAAAACAATGTTTATTTCCTAAGTATAGTAGTTATAAACGTTGAGTACATAGGAATTTTGTTAATCCAATATTGGATTTGGAAAAAGGATCCCAACTTGGCATTCCACTGCCTTGATTGTTTATAGAAATCTCGATTGTTTCTGGACACAATTTTACATTTGTCACATATTACTCTTACACACTAGGGGTCTCNATAACTTAGTATGTGCATGTCACTACCGCAATGGCCTTATGTAAACTCCTTGATTGTGATTATGTAAAAAAAAAAAAGAGGTTTATGAGAATTTTAATCTACAAAGGCATTATTAAATTGTTACTTTTGGAGCCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	489517	493886	+

Gene family

Gene family	subfamily
Transcription Factors Family	IWS1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006351 transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003250.1	PF08711.6	Med26	167	217	7.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.571
SRR1783600	control	4.635
SRR1783602	moderate drought stress	3.880
SRR1811619	moderate drought stress	3.890

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.664
DRR006520	Root Summer glycyrrhizin high producing strain	11.385
DRR006521	Root Winter glycyrrhizin high producing strain	24.374
DRR006522	Root Winter glycyrrhizin high producing strain	23.237
DRR006523	Root Summer glycyrrhizin low producing strain	21.429
DRR006524	Root Summer glycyrrhizin low producing strain	21.197
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.360
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.140

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.731
SRR2868004	Drought Stress (root)	37.329
SRR2967015	Control (root)	35.473

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	88.862
SRR9715740	Leaf	40.648
SRR9715741	Leaf	99.471
SRR9715739	Root	4.015
SRR9715742	Root	32.038
SRR9715743	Root	26.030

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	63.246
SRR8749028	MeJA induced 9h	121.048
SRR8749029	MeJA induced 9h	81.950
SRR8749030	Uninduced	110.487
SRR8749031	Uninduced	100.655
SRR8749032	Uninduced	63.056

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.479
SRR8400027	Control - Root	23.574