Gene detail information of Glyur000013s00003242 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33990.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004493379.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Cicer arietinum] |
| Swissprot | tr|O81767|PP348_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g33990 |
| trEMBL | tr|G7L5W5|G7L5W5_MEDTR | 0 | Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:AES81160.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00013 | 448762 | 451233 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000013s00003242.1 | PF01535.15 | PPR | 114 | 140 | 0.00047 |
| Glyur000013s00003242.1 | PF01535.15 | PPR | 186 | 210 | 0.81 |
| Glyur000013s00003242.1 | PF13041.1 | PPR_2 | 211 | 255 | 8.60E-12 |
| Glyur000013s00003242.1 | PF13812.1 | PPR_3 | 286 | 310 | 0.019 |
| Glyur000013s00003242.1 | PF01535.15 | PPR | 314 | 343 | 0.0059 |
| Glyur000013s00003242.1 | PF01535.15 | PPR | 388 | 410 | 0.55 |
| Glyur000013s00003242.1 | PF13041.1 | PPR_2 | 413 | 461 | 3.40E-08 |
| Glyur000013s00003242.1 | PF01535.15 | PPR | 490 | 512 | 0.00044 |
| Glyur000013s00003242.1 | PF13041.1 | PPR_2 | 517 | 563 | 4.20E-09 |
| Glyur000013s00003242.1 | PF01535.15 | PPR | 591 | 614 | 0.24 |
| Glyur000013s00003242.1 | PF14432.1 | DYW_deaminase | 704 | 813 | 1.20E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.185 |
| SRR1783600 | control | 3.303 |
| SRR1783602 | moderate drought stress | 4.030 |
| SRR1811619 | moderate drought stress | 3.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.517 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.551 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.208 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.331 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.764 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.793 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.985 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.445 |
| SRR2868004 | Drought Stress (root) | 9.521 |
| SRR2967015 | Control (root) | 9.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.373 |
| SRR9715740 | Leaf | 4.268 |
| SRR9715741 | Leaf | 6.588 |
| SRR9715739 | Root | 0.594 |
| SRR9715742 | Root | 2.915 |
| SRR9715743 | Root | 2.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.379 |
| SRR8749028 | MeJA induced 9h | 2.865 |
| SRR8749029 | MeJA induced 9h | 2.106 |
| SRR8749030 | Uninduced | 2.994 |
| SRR8749031 | Uninduced | 3.088 |
| SRR8749032 | Uninduced | 3.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.747 |
| SRR8400027 | Control - Root | 8.834 |