Gene detail information of Glyur000013s00003240 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30330.1 | 1.00E-13 | Small nuclear ribonucleoprotein family protein |
| NR | XP_010090509.1 | 1.11E-18 | hypothetical protein L484_017131 [Morus notabilis] |
| trEMBL | tr|W9QTF3|W9QTF3_9ROSA | 4.00E-19 | Uncharacterized protein {ECO:0000313|EMBL:EXB39658.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00013 | 442357 | 444744 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000013s00003240.1 | PF01423.17 | LSM | 34 | 71 | 3.30E-06 |
| Glyur000013s00003240.2 | PF01423.17 | LSM | 15 | 52 | 1.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 97.505 |
| SRR1783600 | control | 90.107 |
| SRR1783602 | moderate drought stress | 71.806 |
| SRR1811619 | moderate drought stress | 69.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 141.929 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 138.537 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 129.485 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 123.308 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 90.545 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 96.600 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.579 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 52.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 128.165 |
| SRR2868004 | Drought Stress (root) | 109.376 |
| SRR2967015 | Control (root) | 103.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 61.132 |
| SRR9715740 | Leaf | 86.439 |
| SRR9715741 | Leaf | 71.981 |
| SRR9715739 | Root | 26.290 |
| SRR9715742 | Root | 50.187 |
| SRR9715743 | Root | 44.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 296.228 |
| SRR8749028 | MeJA induced 9h | 120.650 |
| SRR8749029 | MeJA induced 9h | 227.989 |
| SRR8749030 | Uninduced | 59.059 |
| SRR8749031 | Uninduced | 31.965 |
| SRR8749032 | Uninduced | 48.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 125.126 |
| SRR8400027 | Control - Root | 123.846 |