Gene detail information of Glyur000013s00003239 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14980.1 | 1.00E-36 | chaperonin 10 |
| NR | NP_001237997.1 | 5.90E-58 | uncharacterized protein LOC100306384 [Glycine max] |
| COG | YP_006447525.1 | 5.00E-22 | Co-chaperonin GroES [Desulfomonile tiedjei DSM 6799] |
| Swissprot | tr|P34893|CH10_ARATH | 2.00E-46 | 10 kDa chaperonin |
| trEMBL | tr|C6SZ55|C6SZ55_SOYBN | 2.00E-58 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G28120.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00013 | 438365 | 441197 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000013s00003239.1 | PF00166.16 | Cpn10 | 5 | 94 | 1.30E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 47.680 |
| SRR1783600 | control | 47.870 |
| SRR1783602 | moderate drought stress | 36.662 |
| SRR1811619 | moderate drought stress | 37.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 90.191 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 89.208 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.397 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.531 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 97.507 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 96.799 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.444 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 53.725 |
| SRR2868004 | Drought Stress (root) | 28.235 |
| SRR2967015 | Control (root) | 22.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.494 |
| SRR9715740 | Leaf | 16.872 |
| SRR9715741 | Leaf | 9.506 |
| SRR9715739 | Root | 37.117 |
| SRR9715742 | Root | 28.558 |
| SRR9715743 | Root | 28.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 139.941 |
| SRR8749028 | MeJA induced 9h | 50.813 |
| SRR8749029 | MeJA induced 9h | 92.051 |
| SRR8749030 | Uninduced | 6.778 |
| SRR8749031 | Uninduced | 5.198 |
| SRR8749032 | Uninduced | 11.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 50.297 |
| SRR8400027 | Control - Root | 46.525 |