Gene detail

Gene detail information of Glyur000013s00003237.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26800.1	1.00E-125	Aldolase superfamily protein
NR	XP_004493382.1	0	PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Cicer arietinum]
COG	YP_005027230.1	3.00E-127	isopropylmalate/homocitrate/citramalate synthase [Dechlorosoma suillum PS]
Swissprot	tr\|O81027\|HMGCL_ARATH	8.00E-167	Hydroxymethylglutaryl-CoA lyase, mitochondrial
trEMBL	tr\|I1N8Q3\|I1N8Q3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G30880.1}

Sequence

Transcript Sequence

>Glyur000013s00003237.1
CTTATTATTGTAAGATTGTCCTTATCCAACTNCAACTCATCTTTGTTTGTTGTTTCCCTCCTAATCCAACCAACAACAATTACAATCATCGCGAAACCAATTAAGAGAAATTATTCTTTCGTCTCTGAGTTATAATTCTCTTCTTCTCCTCATCAAGTTCAAGTGCTTGTGTTCCAAAAGGGTATGCATAAGATTGTACAAAGGGGGCGATTCTTAAATCGTCCACCAGTTCTAACACTGCCACACTTGGAGCAATCGCAACTCATTGCTGGGTTCTCAAGCCATGCTACTATTGATACAATCCCAACATTTTCCTCTTATGCTGGCATGGACAGAGCTCGCCGGGTTGAATCGCTTGATTTTCGGGAAACTACAAACACAAAAGAACCCAGGAATGCATTTGACAAATACAGTATAAAAGGTTTGTCTCGATGCCTGAACTGGATTTCGAGGCCAAATGATAATCGTCATGCTGGCTGTTATGTGGTAACTCGTCATTTTACATCTGATCGCAATGATAGATGCACAAAGGAGTTCTCAAGTAAGCTTCTTAAAAATATTCCGGACTTTGTGAAGATAGTGGAGGTTGGTGCAAGGGATGGATTGCAAAATGAGAAGGTTATTGTTCCTACTGATGTGAAAATTGAATTGATAAAACTGTTAGTTTCTTCTGGGTTGTCTGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTGCCACAGTTGGCAGATGCAAAGGATGTATTGGCAGCAATTCAAAACGTTGAAGGTGCTAGCTTTCCTGTCTTAACTCCAAACCTCAAAGGTTTTGAGGCAGCTGTTGCTGCTGGAGCTAAGGAAGTGGCTGTTTTTCCTGCGGCTTCTGAATCATTCTCTAAAGCAAATCTCAATAGTGGCATTGAGGATAATCTTGCTCGTTGCCGTGATATTGCTTCAGCCTCTAGAAGCCTCTCAATCCCAGTTCGCGGATACATATCATGTGTTGTGGGATGTCCTCTGGAAGGAAAAATCGCTCCAGCAAAAGTCGCATATGTTGCAAAATCACTTTATGAGATGGGTTGCTCTGAGATTTCACTAGGGGATACAATTGGTGTTGGTACACCTGGTACNGTCATTCCAATGCTTGAAGCTGTTCTTGAAGTTGTTCCGATTGACAAGCTTGCTGTCCACTTTCACGACACTTATGGTCAGGCACTTTCAAATACTCTAATTTCACTTCAGATGGGGATCAGCACAGTGGATTCATCAGTCTCTGGTCTCGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTTGCCACTGAGGATGTTGTTTACATGCTGAATGGACTCGGAGTGAGAACCAATGTGGACCTTGGAAAACTTATGCTTGCTGGGGATTTCATCTGCATGCATTTAGGACGTGCTTCTGGTTCAAAAGCTGCAACTGCCTTGAGTAAAGTTACAACTCATGCCTCCAAACTGTGAGTTACTAAAGCTAAGATCATGCATCCGCATGAGAGAGGTAGGTTGTTTACACCATAAGTTGTTATGACTGTGTTTATTGGTGTTTCCCCTCATGTGGGTCCTGCCTATAGACAAGACACTGAGAAAGAGGGAAAAGCCAGAAAAAACACAAGTGTAATGCTTGTTCAGTTCTGCTTATTTACTGAGTCAGTTGAGTCGCTTTGATTATTGAGAGACATCACGTGTTGAACATGCAATCGGGAATGAAACGATGAAAATGCATAGTATGTCCAAGTTCAACAGCATTGTCATCTTTGACATATATTATTTTGTATAATAAAAGTAGTTGACGAAATTCCAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	414420	420551	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01640	E4.1.3.4, HMGCL, hmgL	EC:4.1.3.4	Butanoate metabolism	map00650
			Synthesis and degradation of ketone bodies	map00072
			Valine, leucine and isoleucine degradation	map00280
			Geraniol degradation	map00281
			Peroxisome	map04146

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003237.1	PF00682.14	HMGL-like	138	385	8.20E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.712
SRR1783600	control	5.808
SRR1783602	moderate drought stress	6.382
SRR1811619	moderate drought stress	6.139

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.643
DRR006520	Root Summer glycyrrhizin high producing strain	10.797
DRR006521	Root Winter glycyrrhizin high producing strain	8.929
DRR006522	Root Winter glycyrrhizin high producing strain	8.855
DRR006523	Root Summer glycyrrhizin low producing strain	9.318
DRR006524	Root Summer glycyrrhizin low producing strain	9.265
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.734
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.375

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.316
SRR2868004	Drought Stress (root)	13.545
SRR2967015	Control (root)	12.695

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.806
SRR9715740	Leaf	8.456
SRR9715741	Leaf	8.674
SRR9715739	Root	1.494
SRR9715742	Root	6.960
SRR9715743	Root	5.338

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.705
SRR8749028	MeJA induced 9h	7.517
SRR8749029	MeJA induced 9h	3.890
SRR8749030	Uninduced	6.338
SRR8749031	Uninduced	5.219
SRR8749032	Uninduced	3.292

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.485
SRR8400027	Control - Root	12.368