Gene detail

Gene detail information of Glyur000013s00003236

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G73590.1	Auxin efflux carrier family protein
NR	KEH23588.1	auxin efflux carrier family transporter [Medicago truncatula]
Swissprot	tr\|Q67UL3\|PIN1C_ORYSJ	Probable auxin efflux carrier component 1c
trEMBL	tr\|A0A072U367\|A0A072U367_MEDTR	Auxin efflux carrier family transporter {ECO:0000313\|EMBL:KEH23588.1}

Sequence

Transcript Sequence

>Glyur000013s00003236.1
ATGATATCTGCTTTAGACTTATACCATGTCCTCACAGCAGTTGTTCCTCTCTACGTGGCCATGATCCTCGCCTACGGTTCAGTGAAATGGTGGAAAATCTTCAGCCCAGACCAATGTTCAGGAATCAACCGCTTCGTTGCCCTGTTCGCAGTCCCACTCCTTTCATTCCACTTCATCTCAACCAACAACCCCTACGCCATGAACTACAGGTTCATAGCAGCTGACTCACTCCAAAAAGCCATAGTCCTCACAGTACTCTTCATATGGTCAAGGACAAGCTCAAGAGGATCACTAGAATGGTCCATCACACTATTCTCCCTGTCCACACTCCCAAACACACTCGTCATGGGAATCCCATTGCTGAAAGGCATGTACGGTGACAACTCGGGTACCCTCATGGTTCAAATCGTGGTGCTCCAGTGTATCATATGGTACACCCTCATGCTGTTCTTGTTTGAGTACAGGGGTGCGAGGCTTTTAATAGTGGAGCAGTTCCCTGATACTGCGGGTTCCATTATTTCATTCAAGGTTGATTCTGATATTGTTTCTTTGGATGGGAAAGAGCCTCTTCAGACTGAGGCTGAGGTTGGTGAAGATGGGAAGCTTCNTGTTAAGGTTAGAAAGTCAACGAGTTCGAGGTCTGAGATATTCTCAAGGCGTTCACATGGACCTAACTCGGGTGTGTCACTCACTCCTCGTCCTTCGAACTTGACCAATGCTGAGATTTACTCTCTTCAGAGTTCGAGGAACCCTACGCCGAGAGGGTCTAGTTTTANCCACACGGATTTTTATTCAATGGTGAATAATGGGAAAAACGTGAGCCCCAGACAGAGTAATTTCGGAAGTTTGGGTTTTGATGAGGAGAGTGGCGTGGGTAGGNTCAATGGTGGAACAGGGTACCCTGCTCCTCATAGTGCGGGGATTTTTTCGCCTGTGACTGGTCCTGGGGCTAAGAAGAACAAGGCTAATGGTGGTGGTGATGGGGGAAAGGATCTTCATATGTTTGTTTGGAGTTCAAGTGCTTCACCTGTTTCTGAAGGTGGAATCCATGTCTTCAGAGGTGGTGGAGATTTTGGGAATGATCACCACCTTGGCGGGGTAGCTCACCAAAAAGATTATGAGGAGTTTGGTCACGATGAGTTTAGCTTCGGAAACAGAACCGTCGCTAATGGTGTGGACAAGGAAGGGCCAGTGCTTTCCAAGCTTGGTTCAAGCTCCACAACTGAACTACACCCTAAAGCTGGGTCCCATGGAGAATCCAAACCCACTTCCATGCCACCTGCCAGTGTCATGACGAGGCTCATTTTGATTATGGTGTGGCGAAAGCTTATTAGGAACCCCAACACTTACTCAAGCCTTATTGGTCTCACCTGGTCTTTGATCTCATTCAAGTGGAATGTTGTTATGCCTGCAATTGTTGCTCGATCAATATCAATTTTATCTGATGCAGGACTTGGGATGGCAATGTTTAGCCTTGGGTTATTCATGGCATTGCAGCCAAAGATTATTGCATGTGGAAACTCGGTTGCNTCCTTTGCCATGGCGGTTCGTTTCCTTACTGGCCCTGCAGTCATGGCTGTTGCTTCCATCGTTGTAGGACTCAGGGGAGTTCTGTTGCACATTGCTATTGTACAGGCTGCTCTGCCACAAGGGATTGTCCCCTTTGTGTTTGCTAAGGAATACAATGTTCATCCTGACATACTTAGCACTGGGTTTGAACTTTGAACTCTTATTCCTCTATCAATTCTTCATAGCCACTTTGTAGGTGTACCCTCTTGCCTAGACCCATANCAAAATGTTTAAAGGCTTTGTTTTTGGTTTATTTTTGTTGCAGGGTTATATTTGGGATGCTAATTGCTCTTCCAATCACGCTAGTTTATTACATTTTACTGGGGCTCTGAAGTGATGTTGAGGACGTGAAATGAAAGAAAAGACTAATTGCAGTGGCTTGATTACGCCCTTTTTTTATGTTATTATTATAGGGTAATTTTATTTTTTTGGGGGGGCCATCATCATCTAACAATGTAGAATTTAGTAAGTTAGTGACAGAGGTCAGAGGGGGGAGTGAGGTTGTTTTCTCCATACACAGTGGTAAGAGTTGCAACTGGGAAAACACAGAAATATTTTTATAGGGCTATAGCAACTAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	396932	399811	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003236.1	PF03547.13	Mem_trans	9	572	6.80E-173

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.056
SRR1783600	control	3.111
SRR1783602	moderate drought stress	1.557
SRR1811619	moderate drought stress	1.577

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.924
DRR006520	Root Summer glycyrrhizin high producing strain	0.990
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.050
DRR006523	Root Summer glycyrrhizin low producing strain	1.025
DRR006524	Root Summer glycyrrhizin low producing strain	0.967
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.173
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.170

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.574
SRR2868004	Drought Stress (root)	8.434
SRR2967015	Control (root)	6.200

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.320
SRR9715740	Leaf	0.118
SRR9715741	Leaf	0.152
SRR9715739	Root	3.125
SRR9715742	Root	2.891
SRR9715743	Root	3.285

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.712
SRR8749028	MeJA induced 9h	3.105
SRR8749029	MeJA induced 9h	3.227
SRR8749030	Uninduced	0.277
SRR8749031	Uninduced	0.172
SRR8749032	Uninduced	0.234

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.252
SRR8400027	Control - Root	6.819