Gene detail

Gene detail information of Glyur000013s00003231

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G41140.1	0	CDPK-related kinase 1
NR	XP_004493390.1	0	PREDICTED: CDPK-related kinase 7-like [Cicer arietinum]
COG	YP_003339135.1	5.00E-18	serine/threonine protein kinase-like protein [Streptosporangium roseum DSM 43021]
Swissprot	tr\|O80673\|CAMK1_ARATH	0	CDPK-related kinase 1
trEMBL	tr\|Q2HT01\|Q2HT01_MEDTR	0	Protein kinase; Calcium-binding EF-hand {ECO:0000313\|EMBL:ABD33022.1}

Sequence

Transcript Sequence

>Glyur000013s00003231.1
CACTTACAAAAAGCAGAAAAAGGATGAGGGATTGGTTTCTTTTCTCTTTTTTCTTGCAGACTCTGCCAAGCATCTTTGCCTCACTTTCCCATCCTTTTTCTCTCCTCTCACTCCTTCATTCTCCTCTTGGAATATTTTCATTTTTTTAATTTTAATTTTTCCAACTAAGTTTTCTTGGTCTGAGCAGCTTCTACAGTTCTACTATACCCACATATTCCTTCCCTCTTCTAGCCACAAATTGCTTTCTTCTTTAGGTGAAAATCCTTGCAGGTTTTCCCTCTCTGGGATCATCTACTACTACAAAAGTCTGCTTCCTTTCCTCAATATTTAACACACAATTAACCCCCCCCCCCCCCCAAAAAACATTCCCAGATTTCTCATTTTTGTTGTAACTTTAACTCAGTAAATGCATGCCCTTGATCCTTTTCTCTAGGGAAATCCTGAACTCAAGTTACCCAATTTGGTTCCTCACTTACCCATCTTCCCGTTGATCTAAAAAATCTGAACTTTTTTGTTTCCCAGTTGTGTTTTTTGTCTCTGTTTTCATGGGACTCTGTCATGGAAAACCCATTGAAACCTCACAGAGAAAAACAGAAGGAGGAAGAGAAAACCCAATTTTCCCCAACGACAAAGAGGTTCTGCCACTGCCACTGCCATCACCAAGTTCGCACCATGCAACTACTAAATCCTCTTCAAAGTTCCCATTTTTCAGCCCAAGTCCCTTACCCAGCCTCTTTAAGAATTCACCAGCGAACTCCTCTAGTGTGAGCTCAACCCCTTTACGCATATTCAAGCGCCCTTTTCCACCTCCTTCACCGGCGAAGCACATTAGGGCACTTCTCGCTCGGCGCCATGGCTCTGTGAAGCCCAATGAGGCCACTATCCCTGAAGGGAGTGAGTGTGAGGTTGGGTTGGACAAGAGTTTCGGGTTCTCAAAGCAGTTCGTGGCTCACTATGAGCTTGGACAAGAAGTGGGGCGTGGCCATTTTGGATACACTTGCTCTGCCAAGGGGAAAAAAGGAAGCTTCAAGGGCCATGATGTTGCTGTCAAAGTCATTCCAAAATCCAAGATGACAACAGCAATTGCTATAGAGGATGTAAGAAGAGAAGTGAAGATATTGCGAGCCCTAACTGGGCATAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGACGACGACAATGTTTATGTAGTTATGGAATTATGCAAAGGAGGTGAATTGCTAGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAGGATGCCAGAGTTGTTTTGATTCAGATATTAAGTGTGGTAGCTTACTGTCATCTGCAGGGTGTTGTCCACCGTGATCTCAAGCCAGAGAATTTTCTTTTTACTTCTGAGGATGATAATTCCACACTGAAGGCCATTGATTTTGGGCTGTCCGACTACGTAAAGCCAGAATCTGGCATATTTCGGGCTGTCCTGAAGGCAGATCCTAGTTTTGACGAAGCTCCCTGGCCTTCTTTATCGGCCGATGCAAAAGATTTTGTAAAGAGGCTATTGAATAAAGATTATCGTAAAAGACTAACCGCAGCTCAGGCTCTCAGTCATCCATGGCTGGTGAATCACTGTGATGATATAAAGATACCATTTGATATGATAATCCACAAGCTTGTCAAAGCTTACATATGCTCATCTTCTTTACGCAAATCNGCATTAGGGGCTCTTGCAAAGACATTGACATTGGTGCAACTAGCATATCTCAGAGAACAATTTACTCTATTAGGACCAAACAAAAGTGGGCTAATCTCTATGCAGAACTTCAAGACGGGTATCTTAAGGAGCGCCACTGATGCCTCGAAGGATTCACGTGTCTTAGATTATGTGACCATGGTTAGTTCAATCCAATATCGAAAATTGGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTGGAGGGAATGGACACCTGGGAGCAACATGCAAGGCGTGCCTATGAGCTGTTTGAAAAGGATGGAAATAGACCAATTATGATTGAAGAGCTTGCCTCGGAACTTGGGCTTAGCCCGTCGGTACCAATTCATGTGGTACTCCAAGATTGGATAAGACACTCGGACGGGAAGCTTAGTTTCTTGGGGTTTGTCAGACTTCTGCATGGAGTTTCTACTCGTACATTTCATCAGAAGGCTTGAGAGAAAAATAAACACATGATTGCTATTGTTTCTCTTTTTTTTTTCGCTTGCCCTTATTGGTCACCATAAATCTTTTGATGAGATTTGAATGCATGATGAAACTCATGAGGCAAACTACAACAGCAAGAAGATCTCTTCATCATGATGACAAACATGGCCTTTTGCAATTGCAAGCCAAAAAGCCTATAAGCTTATTGTTGGGAGTTGACCATGATGCTCTATATGCAACATATCCTGTTGTTAAGATGACCCTTCAAGAGTCCTACAAACTGAGAACACTTTCCTCCACCCTCTTTCTTGCTCTCTTTAAGTATGAGATAGGTGGTTCTGGAGTTAGAGGCTTGTACAGATATGAAAGTTAGAGCACAAGTTGTACTTAGGAACTAGCGGAACCTTTTATAAATTGAGTTGTGTTTTTGGGTTTATCCCTTGTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	353916	360029	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003231.1	PF00069.20	Pkinase	137	292	1.10E-36
Glyur000013s00003231.1	PF00069.20	Pkinase	299	349	4.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.657
SRR1783600	control	25.323
SRR1783602	moderate drought stress	21.848
SRR1811619	moderate drought stress	21.606

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.858
DRR006520	Root Summer glycyrrhizin high producing strain	36.701
DRR006521	Root Winter glycyrrhizin high producing strain	9.845
DRR006522	Root Winter glycyrrhizin high producing strain	9.637
DRR006523	Root Summer glycyrrhizin low producing strain	35.545
DRR006524	Root Summer glycyrrhizin low producing strain	35.261
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.904
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.140

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.342
SRR2868004	Drought Stress (root)	29.398
SRR2967015	Control (root)	35.269

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.773
SRR9715740	Leaf	29.577
SRR9715741	Leaf	31.003
SRR9715739	Root	14.147
SRR9715742	Root	38.056
SRR9715743	Root	33.244

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.146
SRR8749028	MeJA induced 9h	15.602
SRR8749029	MeJA induced 9h	15.007
SRR8749030	Uninduced	2.553
SRR8749031	Uninduced	1.635
SRR8749032	Uninduced	2.502

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.476
SRR8400027	Control - Root	47.949