Gene detail information of Glyur000013s00003223 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80270.3 | 0 | PENTATRICOPEPTIDE REPEAT 596 |
| NR | XP_004493398.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9C977|PP135_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g80270, mitochondrial (Precursor) |
| trEMBL | tr|I1N8R7|I1N8R7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G31020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00013 | 285065 | 288906 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000013s00003223.1 | PF01535.15 | PPR | 258 | 285 | 0.056 |
| Glyur000013s00003223.1 | PF13812.1 | PPR_3 | 326 | 356 | 0.018 |
| Glyur000013s00003223.1 | PF01535.15 | PPR | 434 | 456 | 0.24 |
| Glyur000013s00003223.1 | PF01535.15 | PPR | 465 | 492 | 0.14 |
| Glyur000013s00003223.1 | PF01535.15 | PPR | 498 | 524 | 0.061 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.671 |
| SRR1783600 | control | 9.730 |
| SRR1783602 | moderate drought stress | 14.018 |
| SRR1811619 | moderate drought stress | 13.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.161 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.103 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.103 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.687 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.319 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.745 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.768 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.614 |
| SRR2868004 | Drought Stress (root) | 16.560 |
| SRR2967015 | Control (root) | 14.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.435 |
| SRR9715740 | Leaf | 9.968 |
| SRR9715741 | Leaf | 5.892 |
| SRR9715739 | Root | 4.451 |
| SRR9715742 | Root | 15.485 |
| SRR9715743 | Root | 12.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.849 |
| SRR8749028 | MeJA induced 9h | 18.611 |
| SRR8749029 | MeJA induced 9h | 14.183 |
| SRR8749030 | Uninduced | 0.768 |
| SRR8749031 | Uninduced | 0.463 |
| SRR8749032 | Uninduced | 0.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.164 |
| SRR8400027 | Control - Root | 20.824 |