Gene detail

Gene detail information of Glyur000013s00003219

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G04130.1	DNA GYRASE B2
NR	XP_003521129.1	PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Glycine max]
COG	YP_001659837.1	DNA gyrase subunit B [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q5YLB4\|GYRB_NICBE	DNA gyrase subunit B, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|I1JN48\|I1JN48_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G28290.1}

Sequence

Transcript Sequence

>Glyur000013s00003219.1
ATGCGCCAAAACATAGGGTTTAGAAGTGAAAAAACAAAAGAAGATAGAGGGAAGGAGGAGGGAAAGAAGAGTTTGAGACTGAGAAAAGAGAGTGACGAGATTTTCTCCGAGGAAATTTTCAATTCCCCGTTTGATACAAAATGCAGTTATTCCAAGGGCATATATGTCGTACTTGAAGGCTTGGACCCTGTAAGAAAAAGGCCTGGGATGTATATTGGAAGCACTGGCCCGCGTGGATTGCATCATTTGGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGATTTGCTTCAAAGATTCATGTTGTTTTACATGCAGATGATTCTGTGAGCATCACTGACAATGGTCGCGGGATTCCCACCGACTTGCATCCAGTTACAAATAAATCTGCCTTAGAGACAGTGTTGACGGTCTTGCATGCTGGTGGAAAATTTGGTGGCGCTAATAGTGGCTACTCTGTTTCAGGAGGTTTACACGGTGTTGGTTTATCTGTTGTTAATGCCTTGTCTGAGGAACTAGAGATAACAGTTTGGCGTGATGGATTGGAATACATGCAAAGGTATTCTCGTGGGAAGCCAGTGACAATTTTGAAGTCCCTTGTGCTTCCTGTTGAAAAGAAAGATCGTCAAGGGACACAGATCAGATTTTGGCCCGACAAAGAAGTATTCACCACTGCTATTCAGTTTGATTACAACACAATAGCTGGACGCATTAGGGAGTTGGCTTTCCTCAACCCAAAGCTTACTATCACGCTTCGGAAAGAGGACAATGATCCGGAAAAGACCCAATATAATGAGTATTTCTATGCTGGGGGATTGGTTGAATATGTGAAATGGCTTAACACTGATAAGAAGGCTCTTCATGATGTTCTGAGTTTCAGAAAAGAAATGGATGGAATCGCAATTGATATAGCTTTGCAATGGTGTGAAGATGCATACTCGGATACAATACTAGGATATGCTAATAGTATACGCACTATCGATGGTGGCACCCATATCGATGGTATGAAGGCTTCTTTAACAAGAACACTGAATAATCTCGGAAAGAAATCAAAAATTATCAAGGAAAAGGATATTACTTTAAGTGGCGAACATGTGAGAGAGGGTTTAACATGTGTTGTCTCAGTCAAGACAAGGTTGGGAAATCCAGAGGTGCGAAAAGTGGTTGATCAATCTATTCAAGAGTATCTTACTGAGTATTTGGAATTGCATCCAGATGTTCTTGATTCNGTGCTTTCTAAAGCTCTTAATGCTTTCAAGGCAGCTTTGGCGGCAAAAAGAGCAAGGGAATTGGTGAGACAAAAGAGTGTTTTGAGATCTTCATCTCTTCCGGGAAAGCTCGCTGATTGTTCATCCACAAATCCTGAAGAATGTGAAATTTTTATAGTTGAAGGTGATTCAGCTGGAGGAAGTGCTAAGCAAGGTCGTGATAGGCGCTTCCAGGCTATTCTCCCTTTGAGGGGTAAGATTTTGAATGTTGAAAGGAAGGATGAAGCAGCAATGTACAAAAATGAAGAGATCCAAAATTTAATCCTNGGTCTTGGTCTCGGAGTGAAGGGAGAGGATTTTAAAAAGGATGCACTCCGATATCATAAGATTATTATTTTGACTGATGCTGACGTAGATGGTGCCCACATCCGAACTCTGCTACTGACATTTTTCTTTAGATATCAGAGAGCTTTGTTTGATGAAGGTTGCATATATGTCGGTGTTCCACCACTCTACAAGGTTGTGAGGGGAAAACAAGTGCACTATTGCTATGATGAGGCTGATCTTAAAAAACTTAAGAGCTCATTCCCTCCTAATGCATCATACAACATGCAAAGGTTCAAAGGGCTGGGAGAGATGATGCCTTTACAACTATGGGAGACAACCATGGATCCAGAATGCAGGTTATTGAAGCAATTGACGGTTCAGGATGCAGCTGAAGCAAATATTGTTTTTTCCTCCCTTATGGGCACTCGGGTGGATGTTCGGAAGGAGCTGATACGAAATTCTGCAAACATGGTTGATCTTGATCAGCTAGACATATGATGGGTGTGGAGAAATGGAATGTCTTTTCTTCTTAACCATAAACACTACATCATACATAGTCAAGCACAATTTTTTCCATATGCTTGTGGAATGCGGAGACGTCTTAATTGAAGCAAGGCTCCTACTTTTTTTTGGTNGGTGCCATTTGGTGAATTTAAAAGCATTCATTGTTCACTGGCTAGAGTGGATCAGCGTTCATTTGCACTTGCTGGGAAACATTTGGTGGAGATCTAATTTGATTTCTACAAATCTGACAACAAGTGCATATTTTATTGCCCCAATTTTTCTGATCCTACATTGTGCAATTGTTTGTGTAATCTTATTTATATACTTTAGATGTTACCCTTTAGAAGTTACCTGCTCCTGAACTCGTGTTTGATCTTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	262366	271615	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006265 DNA topological change

molecular_function

GO:0003677 DNA binding

GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003219.1	PF02518.21	HATPase_c	77	223	1.10E-17
Glyur000013s00003219.1	PF00204.20	DNA_gyraseB	275	433	3.80E-39
Glyur000013s00003219.1	PF01751.17	Toprim	462	572	2.20E-24
Glyur000013s00003219.1	PF00986.16	DNA_gyraseB_C	605	666	1.70E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.747
SRR1783600	control	4.614
SRR1783602	moderate drought stress	3.410
SRR1811619	moderate drought stress	3.413

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.386
DRR006520	Root Summer glycyrrhizin high producing strain	4.457
DRR006521	Root Winter glycyrrhizin high producing strain	3.373
DRR006522	Root Winter glycyrrhizin high producing strain	3.419
DRR006523	Root Summer glycyrrhizin low producing strain	3.418
DRR006524	Root Summer glycyrrhizin low producing strain	3.353
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.253
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.207

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.991
SRR2868004	Drought Stress (root)	10.007
SRR2967015	Control (root)	9.654

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.920
SRR9715740	Leaf	13.665
SRR9715741	Leaf	4.757
SRR9715739	Root	0.523
SRR9715742	Root	2.599
SRR9715743	Root	2.316

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.322
SRR8749028	MeJA induced 9h	6.568
SRR8749029	MeJA induced 9h	4.468
SRR8749030	Uninduced	0.635
SRR8749031	Uninduced	0.452
SRR8749032	Uninduced	0.562

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.990
SRR8400027	Control - Root	18.372