Gene detail information of Glyur000013s00003216 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41180.1 | 5.00E-07 | VQ motif-containing protein |
| NR | XP_003554126.1 | 5.00E-34 | PREDICTED: uncharacterized protein LOC100808231 [Glycine max] |
| Swissprot | tr|O80669|SIB2_ARATH | 1.00E-11 | Sigma factor binding protein 2, chloroplastic (Precursor) |
| trEMBL | tr|I1N8S5|I1N8S5_SOYBN | 2.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G31080.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00013 | 232958 | 233431 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000013s00003216.1 | PF05678.9 | VQ | 32 | 56 | 1.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.707 |
| SRR1783600 | control | 1.018 |
| SRR1783602 | moderate drought stress | 1.168 |
| SRR1811619 | moderate drought stress | 1.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.458 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.648 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.186 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.699 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.693 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 352.683 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 361.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.164 |
| SRR2868004 | Drought Stress (root) | 0.041 |
| SRR2967015 | Control (root) | 0.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.970 |
| SRR9715740 | Leaf | 11.228 |
| SRR9715741 | Leaf | 22.236 |
| SRR9715739 | Root | 1.171 |
| SRR9715742 | Root | 0.451 |
| SRR9715743 | Root | 0.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.745 |
| SRR8400027 | Control - Root | 0.628 |