Gene detail

Gene detail information of Glyur000013s00003213.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26850.1	1.00E-56	F-box family protein
NR	XP_003520488.1	3.24E-126	PREDICTED: F-box protein At2g26850-like isoform X1 [Glycine max]
Swissprot	tr\|Q6NLB1\|FB118_ARATH	6.00E-64	F-box protein At2g26850
trEMBL	tr\|K7KEN5\|K7KEN5_SOYBN	1.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G28222.1}

Sequence

Transcript Sequence

>Glyur000013s00003213.1
ATGAGAAATGACATAGAGACCATCGTTGAAAATGACATAGAAATTGTGGACGCTTCGTTTTGGCTTTGTGGGGTGGTGGAAGCTGCAAAGTTCTTTTTCAAACTCTTGGTTTCTTTAAGGTTCCCACAGATCATAATGTCACAAGAGAAAAACTCGGTACCAAAGTTGAAGGAGCAAGATGATTGTAAGGTTTCTCTGTTGGATTTGCCTGAATGGGCNTTGAATTGCATTCTTGAGCGCCTTTCCCCACAGGATTTGTACAGGTTAGCACAAGTGTGCACTTATTTGAGAAATAGNAGCAGAAGCGATCATTTGTGGGAGAAACAAGTCACGCAGAGATGGGGTAGGGTGCTTGGNGATGTTGTTCACCAAGAGTGGCAGTGGCATACAACAAAAATGAACACAGAAAGTTTCTTGTTACAGCCGAATCAGAGTGGATCATGTGGCTCTTTTAGTGGTGTTTGGCCATTTCTAAGCCTGAATTCTTACTTGGAAAATTTCAGGGACTTGATTGAAATTGTTCAAAANTGGCTTTGTTTATCTGTCTTGAGAGTGGCCGCTTCTGGTTTCCTGCTCAAGTGTACAAGCTATGACTCTAGCACAGATACCTTCCGGACAAGGTCTCCAACTGGTGGGTGGCGAATGATGGAAGGAAATGTTCGGTGGGATAGGTTGAGATTCTCACAAGTTGAGACTTTTTCAAGGGGTTTTTATATGTCTAACTGTCTGAATGAATTGAAACCTGGAGATCATATTGAGATTCAGAGGAGAAAACGCAAAGAATTACCTTATGATTGGTGGTTTGGTGTGGTTGGTCATTTGGAAACATGTGACGAGAACGTGAATCATTGTCATTGCCAATATATTGAAACGTTGATAGTGGAGTTTAAGCAATACCCTCACGGGAATCGATTTAGAAGATCAGTGCTGAATAGAAATGTGTGTGAGGAACAGGGCTCTAGGCTTTGCTGGTTGGGTGGAATCAGAAAACTTGACAAGGAAGAGGACATTGAAAAGAAGTATTTTAACTTTGCATTGCAACCAGAGGGAAGTCGAAAGAGGAGTATCATAATGTCACCAGAGAGAAACTGGGTACCAAAGTTGGAGAAGCAAGATGATTGCAAGGTTTCTCTGTTGGATTTGCCAGAGTGGGCCTTGGATTGCATTCTCGAACGCCTCTCACCACAGGATTTGTACAGGGTAGCACAGGTGTGTACTTGTTTGAGGGATAGAAGCAGAAGCGATGATCTGTGGGAGAAGCAGGTGAAGCAGAGATGGGGTAGGGTGNTTGGTGATGTTGCTCACCAAGAGTGGCAGTGGCATACAACAAAGATAAACACAGAAAGCCTCTTGTTACAGCCGAATCAGAGTGGATCAATNTACGTTTATACTGTTATGATGCCCTTGTCAGCTAATGACTCTACAACAGATACCTTCTGGACAAGGTCTCCAACCCGTGGTGGGTGGCGAATGATTGAAGGAAATGTTCNGTGGGATAGGTTGAGATTCTCACAAGTTGAGACTTTTCCAGGGGTTTTTTATATGTCTAACTGTCTGAATGATTTGAAACCTGGAGATCATATTGAGATTCAAAAGAAAAACCGCAAAGAATTACCTTATGATTGGTGCTTTGGTGTAGTTGGTCATTTGGATTCATGTGACAAGAATGTGAATCATTGTCATTGCCATTCTAGTGACACGTTGGTCTTGGAGTTTAAGCAATACAACCACGACAGTGAATTGAGAATATCAGTGCCGAACAGAAATGTGTATGAGGAACAGGACTCTGGGTTTTGCTTGTTGGGTGGAATCAGAAAACTTGACAAGGAGGAGATTGAAAAGTGGAACAGCCTCTATAGCTAGAAATTAAAATTTAGAAAAATACATAACAGCTTCATCCTGGATGTGTGTAGATTATGCATCCTATTTATTTTAAATTAAAATGGAACACCATATTACTTGCTTTCAATTCTCTCTGTATAATTCTTAGTTTGGAATCTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	211798	218908	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003213.1	PF00646.28	F-box	65	108	3.00E-07
Glyur000013s00003213.1	PF00646.28	F-box	377	420	3.90E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.591
SRR1783600	control	1.598
SRR1783602	moderate drought stress	1.714
SRR1811619	moderate drought stress	1.856

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.908
DRR006520	Root Summer glycyrrhizin high producing strain	0.853
DRR006521	Root Winter glycyrrhizin high producing strain	0.432
DRR006522	Root Winter glycyrrhizin high producing strain	0.418
DRR006523	Root Summer glycyrrhizin low producing strain	2.748
DRR006524	Root Summer glycyrrhizin low producing strain	2.909
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.185
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.122

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.933
SRR2868004	Drought Stress (root)	0.701
SRR2967015	Control (root)	0.480

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.509
SRR9715740	Leaf	0.303
SRR9715741	Leaf	0.473
SRR9715739	Root	0.126
SRR9715742	Root	0.142
SRR9715743	Root	0.201

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.120
SRR8749028	MeJA induced 9h	1.405
SRR8749029	MeJA induced 9h	1.163
SRR8749030	Uninduced	1.188
SRR8749031	Uninduced	0.374
SRR8749032	Uninduced	0.700

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.395
SRR8400027	Control - Root	2.254