Gene detail

Gene detail information of Glyur000013s00003209

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G04140.1	glutamate synthase 1
NR	XP_004493407.1	PREDICTED: ferredoxin-dependent glutamate synthase 1, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_007110350.1	glutamate synthase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q43155\|GLTB_SPIOL	Ferredoxin-dependent glutamate synthase, chloroplastic
trEMBL	tr\|I1JN60\|I1JN60_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G28410.2}

Sequence

Transcript Sequence

>Glyur000013s00003209.1
GGTGGTGTTTGTGAGGCAGGCATTTCCTGACCTCTCCCTCTTCTCTCTTTTATTATCTTCATCCTCACTCACTCACTCACTTACTACGAGTCACACACACACACACACACGCCCCTTCCCTCTCTCTCTGTCTCTCTCTCTAACGATGGCGCTGCACACGGTGTCGTCGATTTCTCAAGTGCTTCGGCTCTCCGAGGCATATCCTTCGATCCTCAACCCTCACTTGCTCGTCGACTTCGCCCCTCTCTGCCGCAAAAACAAGCGCTGCAGTAACCGCAGATTAACGCCGTTTCGCTCTCCGGCTCCACTCCGTCGTTCCTCCGTCAACGCCGTTCTCCACCTTCACGACCGCCTCCATCCTTCCCCTTCTCCTTCTCCTTCTCCTTCTCCTTCCGATTCAAAACAACAGGTTGCAAACTTGGAGGACATAATATCAGAAAGAGGGGCCTGTGGTGTTGGATTCATTGCCAATTTGGAAAATAAGGCATCGTATGAGATTGTCAAGGACGCTNTAAATGCTTTAAGCTGTATGGAACATCGTGGGGGCTGTGGTGCAGATAATGACTCTGGTGATGGTTCTGGGGTGATGACTGCAATTCCATGGGATCTATTTGACAATTGGGCCAACAAACAAGGGATTGCTTCCTTTGATAAGTTGCACACTGGTGTTGGAATGGTTTTCCTACCCAAAGATGTAGAACTTATGAATAAGGCCAAGAAAGTNATTGTAAATACTTTTCGGCAAGAAGGTCTCGAGGTGATTGGGTGGAGACCAGTCCCTNTAAATACTTCTGTTGTAGGTTATTATGCAAAGGAGACCATGCCCAATATACACCAGGTATTTGTTAAGATTGGGAAGGAAGAAAATGTTGATGACATTGAACGAGAGCTGTACATTTGTCGGAAATTGATTGAAAAAGAAGTAAGCTTGGAAAGTTGGGGAAATGAGCTTTACTTCTGTTCTTTATCCAATCAAACAATAGTTTACAAGGGAATGCTTCGCTCAGAAGTTCTTGGGTTATTTTATTCTGACCTTCAAAATGATCTTTATAAATCCCCCTTTGCCATTTATCATCGAAGGTATAGCACAAACACTAGTCCCAGATGGCCTCTTGCCCAACCAATGAGGCTTCTTGGTCATAATGGAGAGATAAACACAATACAGGGGAACTTGAATTGGATGCAATCACGAGAGCCGTCATTGAAGTCACCTGTGTGGCGAGGTCGTGAAAATGAAATTCGTCCATTTGGAAATCCAAAGGCATCAGACTCAGCAAATCTTGACAGTGCTGCAGAAGCGGTTGACTTCTATGACTACTACAAGGGTCAGATGGAAGCTTGGGATGGACCTGCCTTGCTTTTATTCAGTGATGGAAAAACTGTTGGTGCATGCCTTGATCGTAATGGACTTCGACCTGCTAGGTATTGGCGAACATCAGACAATATGGTCTATGTTGCTTCTGAGGTTGGTGTTGTACCAGTGGATGAGTCAAAGGTTATCTTGAAAGGCCGATTAGGTCCAGGCATGATGATAACAGTCGATTTACCTGGTGGTCAGGTCTACGAGAATACAGAGGTTAAAAAACGAGTAGCCTTATCAAACCCATATGGGAACTGGATCAAGGAAAATCTGCGGTCTTTGAAGCCTGGGAATTTCCTTTCAACCTCTGTGATGGACAATGATGTAATGGTGATTGAGACTATGGCTGCTCAAGGAAAGGAGCCCACATTTTGCATGGGAGATGATATTCCATTGGCAGCGTTGTCTCAGAAACCTCACATGCTTTTTGATTATTTTAAGCAACGGTTTGCACAGGTTACAAATCCTGCAATTGATCCACTTCGAGAAGGGCTAGTTATGTCTCTTGAAGTGAATATAGGGAAGAGACGGAATATATTGGAAATTGGACCAGAGAATGCTTCACAGGTTATATTATCTAGTCCTGTATTGAATGAAGAGGATCTTGAGTCATTACTAAAAGACTCCCACCTAAAACCACAAGTATTGCCCACATTTTTTGATATAACTAAGGGGATTGATGGTTCCTTGGAGAAAGCATTAAATAAGCTTTGCGACGCCGCAGATGAAGCTGTTAGAAATGGTTCCCAGCTGCTTATTCTTTCAGACCGTTCAGAAGCACTGGAACCAACTCATCCTTCAATTCCAATACTTCTTGCTGTTGGAACTGTTCATCAGCATCTAATCCAGAATGGCCTGCGAATGTCAGCTTCAATCATAGCGGATACTGCTCAGTGTTTTAGTACTCATCAGTTTGCCTGTTTAATAGGATATGGTGCAAGTGCTGTGTGTCCATACTTGGCATTGGAGACATGCCGACAATGGCGTTTGAGTAGTAAAACTGTAAATCTGATGAAGAATGGAAAGATGCCAACTGTATCAATTGAACAGGCGCAGAAGAACTACTGCAAGGCTGTAAAAGCAGGTCTTCTTAAAATTCTTTCCAAAATGGGCATCTCATTGCTTTCAAGTTACTGTGGTGCACAGATATTTGAAGTATATGGATTAGGGAAGGAAGTTGTGGATCTTGCATTCAGAGGAAGTGTATCAAAAATTGGTGGATTAACTTTTGATGAGCTGGCAAGAGAGACTTTATCTTTCTGGGTGAAGGCATTCTCTGAAGATACAGCTAAAAGATTGGAAAATTTCGGATTTATACAGTTCAGACCAGGAGGTGAGTATCATGCAAATAATCCAGAGATGTCAAAGTTGCTCCACAAAGCTGTTCGTCAGAAAAGCCAAAGTGCCTTTTCAGTTTATCAGCAACATTTGGCTAATCGACCTGTGAATGTTCTTCGTGATCTTCTTGAGTTCAAAAGTGATCGTGCCCCAATACCAGTGGGTAAGGTTGAACCTGCCTCGTCTATTGTGCAACGTTTTTGCACTGGGGGCATGTCACTTGGAGCTATATCAAGAGAAACTCATGAAGCAATTGCAATTGCAATGAACAGATTAGGTGGAAAATCAAATTCAGGGGAAGGTGGTGAGGATCCTATTCGCTGGAANCCACTAACGGATGTCGTTGATGGTTACTCTCCAACTCTTCCACATCTTAAAGGTCTTCAAAACGGGGATACTGCTACTAGTGCTATCAAGCAGGTTGCTTCAGGAAGGTTTGGTGTCACTCCAACATTTTTGGCAAATGCTGATCAATTAGAAATCAAAATTGCACAAGGTGCAAAGCCTGGTGAAGGTGGACAATTGCCTGGGAAAAAAGTTAGCATGTATATCGCAAGGTTGAGAAATTCTAAACCAGGGGTTCCTCTCATATCTCCACCTCCTCATCACGACATTTATTCTATTGAGGATCTTGCTCAATTGATCTTTGATCTTCATCAGGTGAACCCTAAGGCCAAGGTATCAGTAAAACTGGTGGCTGAAGCTGGAATTGGCACTGTTGCATCTGGGGTTGCAAAGGGCAATGCTGACATTATACAGATTTCGGGACATGATGGGGGAACCGGAGCTAGCCCTATAAGTTCCATCAAACATGCAGGAGGTCCTTGGGAACTTGGACTTACAGAAACTCACCAGACACTCATTGAAAATGGACTCAGAGAAAGGGTAATTCTCAGAGTTGATGGTGGGTTTAGAAGTGGAGTTGATGTCATGATGGCAGCAGTGATGGGTGCTGATGAATATGGTTTTGGTTCAGTGGCAATGATTGCTACTGGATGTGTTATGGCTCGCATTTGCCACACCAATAATTGCCCAGTTGGTGTTGCCAGTCAGAGGGAAGAGTTGCGTGCACGCTTTCCTGGTGTTCCTGGCGACCTTGTCAACTTCTTTTTATATGTAGCTGAGGAGGTAAGAGGCATATTGGCACAACTGGGGTATGAGAAGTTTGATGATATAATTGGCCGGACAGACTTATTGAGACCAAGAGACATATCTCTAGTGAAAACTCAGCATCTAGATTTGAGTTATATCCTCTCTAGTGCTGGGTTACCTAGATGGAGCAGTACAGAAATCAGAAATCAGGAGCCTCACACCAATGGTCCTGTTCTGGATGATGTTTTGCTAGCAGACCCAGAGATTGCAGATGCCATTGAAAATGAAAAAGNGGTTAGTAAGACCATAAAAATATACAACGTTGATCGTGCTGTCTGTGGGCGCATAGCTGGTGTCATTGCAAAGAAGTACGGTGACACTGGTTTTGCTGGACAGTTGAATATAACATTTACAGGAAGTGCGGGGCAGTCATTTGCATGCTTTCTGACACCTGGAATGAACATTCGCCTTATTGGAGAGGCTAATGATTATGTTGGGAAGGGCATTGCTGGAGGTGAGTTGGTTGTCACTCCAGTTGATAAGACAGGGTTTCAACCTGAGGATGCAGCTATTGTGGGGAACACTTGCTTGTACGGGGCAACAGGTGGGCAGGTCTTTGTTAGAGGGAGAGCTGGGGAAAGATTTGCTGTCAGAAACTCACTTGCTGAAGCTGTGGTTGAAGGCNCTGGGGATCATTGTTGTGAGTACATGACTGGTGGATGTGTGGTTATCTTGGGAAAAGTGGGTAGAAATGTAGCTGCTGGAATGACAGGAGGGTTGGCTTACATTCTTGATGAGGACAATACTCTCATTCCCAAGGTAAACAGAGAAATTGTGAAAATTCAACGAGTAACGGCGCCTGTGGGGCAGATGCAACTTAAGACCCTAATTGAAGCCCATGAAAAAACCGGTAGTAACAAAGGTGCTGCTATTCTGAAGGATTGGGATAAGTATTTATCACTATTTTGGCAGCTGGTTCCTCCTAGTGAAGAAGATACCCCAGAGGCTAGTGCCAAATATGACACAACTACTACAGAGCAGATCACTTTGCAGTCTGCTTAGGGAACAATGCAAGCTTAGATTGATTACACCAGGCTCTGGAGCCATAGACGTGTCCCTGCTTTGTACAGGGGATGGTGAGGCTATCAATGGGGTGCCAAAATATGGGGATTAAACTTCCCCTTAAAATACCACTGGGATGCATTCATTCTCAANATCATATTTGCCAGCAGTACGAACGAGGCCCTCCTTTGAAGCATTAGCCTTCTCTTNCCTCAAAGCTTTTGTATAGCCATTTGAAAGGAAAAACTGTAAATAAAATACGGTTTATTATAATCTGATTGGAGGTTTTTGTTG

Protein Sequence

>Glyur000013s00003209.1
MALHTVSSISQVLRLSEAYPSILNPHLLVDFAPLCRKNKRCSNRRLTPFRSPAPLRRSSVNAVLHLHDRLHPSPSPSPSPSPSDSKQQVANLEDIISERGACGVGFIANLENKASYEIVKDAXNALSCMEHRGGCGADNDSGDGSGVMTAIPWDLFDNWANKQGIASFDKLHTGVGMVFLPKDVELMNKAKKVIVNTFRQEGLEVIGWRPVPXNTSVVGYYAKETMPNIHQVFVKIGKEENVDDIERELYICRKLIEKEVSLESWGNELYFCSLSNQTIVYKGMLRSEVLGLFYSDLQNDLYKSPFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSREPSLKSPVWRGRENEIRPFGNPKASDSANLDSAAEAVDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTSDNMVYVASEVGVVPVDESKVILKGRLGPGMMITVDLPGGQVYENTEVKKRVALSNPYGNWIKENLRSLKPGNFLSTSVMDNDVMVIETMAAQGKEPTFCMGDDIPLAALSQKPHMLFDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRRNILEIGPENASQVILSSPVLNEEDLESLLKDSHLKPQVLPTFFDITKGIDGSLEKALNKLCDAADEAVRNGSQLLILSDRSEALEPTHPSIPILLAVGTVHQHLIQNGLRMSASIIADTAQCFSTHQFACLIGYGASAVCPYLALETCRQWRLSSKTVNLMKNGKMPTVSIEQAQKNYCKAVKAGLLKILSKMGISLLSSYCGAQIFEVYGLGKEVVDLAFRGSVSKIGGLTFDELARETLSFWVKAFSEDTAKRLENFGFIQFRPGGEYHANNPEMSKLLHKAVRQKSQSAFSVYQQHLANRPVNVLRDLLEFKSDRAPIPVGKVEPASSIVQRFCTGGMSLGAISRETHEAIAIAMNRLGGKSNSGEGGEDPIRWXPLTDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIENGLRERVILRVDGGFRSGVDVMMAAVMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNFFLYVAEEVRGILAQLGYEKFDDIIGRTDLLRPRDISLVKTQHLDLSYILSSAGLPRWSSTEIRNQEPHTNGPVLDDVLLADPEIADAIENEKXVSKTIKIYNVDRAVCGRIAGVIAKKYGDTGFAGQLNITFTGSAGQSFACFLTPGMNIRLIGEANDYVGKGIAGGELVVTPVDKTGFQPEDAAIVGNTCLYGATGGQVFVRGRAGERFAVRNSLAEAVVEGXGDHCCEYMTGGCVVILGKVGRNVAAGMTGGLAYILDEDNTLIPKVNREIVKIQRVTAPVGQMQLKTLIEAHEKTGSNKGAAILKDWDKYLSLFWQLVPPSEEDTPEASAKYDTTTTEQITLQSA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	175859	197165	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00284	E1.4.7.1	EC:1.4.7.1	Glyoxylate and dicarboxylate metabolism	map00630
			Nitrogen metabolism	map00910

Gene Ontology

biological_process

GO:0006537 glutamate biosynthetic process

GO:0006807 nitrogen compound metabolic process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0015930 glutamate synthase activity

GO:0016491 oxidoreductase activity

GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003209.1	PF00310.16	GATase_2	102	440	2.50E-113
Glyur000013s00003209.1	PF04898.9	Glu_syn_central	514	795	5.80E-109
Glyur000013s00003209.1	PF01645.12	Glu_synthase	853	1237	2.00E-162
Glyur000013s00003209.1	PF01493.14	GXGXG	1318	1509	2.80E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.865
SRR1783600	control	17.919
SRR1783602	moderate drought stress	19.785
SRR1811619	moderate drought stress	19.653

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.712
DRR006520	Root Summer glycyrrhizin high producing strain	11.740
DRR006521	Root Winter glycyrrhizin high producing strain	19.564
DRR006522	Root Winter glycyrrhizin high producing strain	19.072
DRR006523	Root Summer glycyrrhizin low producing strain	13.899
DRR006524	Root Summer glycyrrhizin low producing strain	14.215
DRR006525	Leaf Summer glycyrrhizin high producing strain	429.688
DRR006526	Leaf Summer glycyrrhizin high producing strain	428.182

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	96.067
SRR2868004	Drought Stress (root)	114.773
SRR2967015	Control (root)	83.696

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	262.376
SRR9715740	Leaf	367.082
SRR9715741	Leaf	301.239
SRR9715739	Root	12.230
SRR9715742	Root	44.246
SRR9715743	Root	37.833

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.445
SRR8749028	MeJA induced 9h	32.106
SRR8749029	MeJA induced 9h	16.518
SRR8749030	Uninduced	14.496
SRR8749031	Uninduced	10.274
SRR8749032	Uninduced	10.624

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	64.370
SRR8400027	Control - Root	53.220