Gene detail

Gene detail information of Glyur000013s00003205.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G41370.1	2.00E-177	Ankyrin repeat family protein / BTB/POZ domain-containing protein
NR	KHG11076.1	0	Regulatory NPR5 -like protein [Gossypium arboreum]
Swissprot	tr\|Q9ZVC2\|NPR5_ARATH	0	Regulatory protein NPR5
trEMBL	tr\|G8GTN4\|G8GTN4_MEDTR	0	BTB/POZ ankyrin repeat protein {ECO:0000313\|EMBL:AET34788.1}

Sequence

Transcript Sequence

>Glyur000013s00003205.1
CTATTATAAACCCCCAGCCGCCCAGAACAGCCACCCAAATTGCAATCTCCCTTTCTCTCTCTCCAAAATATCTATCTATATCAAAAACAGAAGCACAAAATTCCCTATCCCAACAGGCATAGCAATAGCAATAGCAATAGCAATAGCATACCCCTCCACTCCACTGGCATTCAAGAGAATCATATCCCACAAAAACAAACCACACAGTTGTGTTGTGACAGTACCATCCATCCCCATCGATCCTCATCAACAAAAAAACCAACAACACCACCAACATCAAAAAACAGATTAAAGAACCCAACCCCCCTCCCATCTCTCACTATTTCACCTCTCTCTCTCTACCAGCCCTAAAACGCTGAGAGGAAACAGCACAGTAGCAAAACAGGAAGCAAGGTTGCTTNTCACATCATCATCATCATCATCATCATCATAGTCATACATACATAGTGACAACATCCACCCATCCATCCATCATCATGTCTCTGGAAGAGTCTCTAAGATCTCTATCCCTGGATTACCTGAACCTGCTGATCAACGGGCAAGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGTCGTCTGGTCCACGCGCACCGCTGCATCCTGGCGGCGCGTAGCCTCTTCTTCAGGAAATTCTTCTGCGGCCCTGACCCACCGCCGGGGCTCGACCCGGGAGGGAACCGGGTCAACTCGTCGGGGTCAAGGTCTTCAGGTGGTGNCGCCGGTGTGATCCCGGTGAACTCGGTGGGGTACGAGGTGTTTCTGTTGATGCTGCAGTTTCTGTACAGCGGGCAAGTTTCCATCATCCCACAGAAACACGAGCCCAGGCCCAATTGTGGCGAGCGTGGTTGCTGGCACACGCATTGCACCTCTGCCGTTGATCTTGCCCTCGACACTCTCTCCGCCGCTCGATACTTTGGCGTTGAACAGCTCGCTTTGCTCACTCAGAAACAACTAGCGAGCATGGTAGAGAAGGCGTCAATAGAAGACGTAATGAAAGTGTTGGTAGCATCAAGAAAACAAGACATGCAGCAACTATGGACCACATGTTCCCACCTGGTAGCAAAATCAGGTCTTCCCCCAGAAGTCCTAGCAAAACACCTCCCCATAGACATCGTAGCCAAAATTGAAGAACTCCGCCTCAAATCCTCCCTCTCACGCCGCTCCTCCTTAATCCCCCACCACCACCACAACCCTCACCACCACCACCACCACCACCACCACCAAGACCACCTCGAAGACCAAAAAATCCGACGAATGAGACGCGCACTCGACTCATCCGACGTGGAACTCGTGAAACTCATGGTAATGGGAGAAGGCCTAAACCTCGACGAGGCACTTGCATTGCCCTATGCGGTTGAGAATTGTAGCAGGGAAGTTGTGAAGGCCTTGCTGGAACTCGGTGCAGCGGATGTTAACTTCCCTTCTGGACCTTCCGGTAGAACGCCGCTTCANATCGCCGCCGAGATGGTGTCGCCGGACATGGTGGCGGTTCTTCTTGACCACCACGCCGACCCCAATGTAAGAACCGTCGAAGGTGTCACGCCTTTGGACATCCTTAGAACCCTAACCTCGGATTTCCTATTCAAAGGCGCTGTCCCTGGGTTAACCCATATTGAACCAAACAAGCTTAGGTTGTGCTTGGAGCTTGTTCAATCCGCTGCTCTTGTTATGTCAAGGGAAGAAGGCAACAATGTGAACACCAATGTGAATGCTACTTCTTCAGCAACAAGTATGAGTATCTACCCTCCTATGAATGAAGACCTTAATAGCAATAGCAACAACAGCAACAACAACTTGGACTCCAGGTTGGTGTATCTTAACCTTGGTGCTACTCAAATGAGTTCAAGGTTGGATACTACTGGTGGTGGTGATGATGATCATAGCAGCCATAATAGCCACAGGGAAGCCATCAACCCCTCCATGTATCATCATCATTCTCATGACTTCTAGTCTAGCTCAAAATTAAAAACAAATTAAAATTTCCAAATAGTGTTACTGATGATCATATATAATTTAAAGTTATTTCAATTGCAATGGATATATTTGATGATGGGAAATATTGGGAGGATTTTAGGAGGAGGAGGAGGAGGAGGAGGTGGTTTGCTTTTGTTCATGAATTGCATTGAAAGGTGCTTCATCATGGACACTATTGGATGGGTGGAGCATAAAAGAAAGAAGAAAAAAAAAAAAAACTTCTTCTTTTGTCAGATGATGATATAGACTGGGAGATATAGTGGTATTGATCATCACTATTAGTCATCGCTGCCCTTTCTGATTTTTATGTCTTTGGCTCTCTGATCCTTTGTTGGGGTTTTACCTTTTTTTTTTTTTTTTTTTTTTTACGTTTTTGGACTTTCTAGTGGTCACCATTTGAAGTGCGGTTTCATAGGAGATTGGGATAAGAAACAGGGAGAATCTAATTATCAGTTTATTTTATTTATTTTGTTTTGTTTTATTTTTTTTTTCCTGTGAAATGAAACGAAAGGATGATGCATGGAGGAGACGCAGGTCAATCTTTTCAGATCCTCTCCTTCACCTGTCAACTCCTTCATTTGTATTTACTGATCCGTAGCTAATATCACGGCCTATTTATTGTGACCCTTTTTTTTTCCTTCACAATTTCAATTGATNTTGTCCCACCCCCCACTTTCTCATTCATAACCCTCAATTATTNTGATTTTGTTTAGCATCTTTTAACTGGGGTGTGTGTGGAGAGGTTAATTTCTTTTCTTTTTCTTTGGTTTATTTTTCAGAAGTTAATTACCTCCATATGGGTGTGTGTGAATGAGTCAATGTGCTGTCCTTTCTCTTCTGTTCCCACCTAATATATTATGTTTTTTTCCTTCTAACATTATGTAAGCCCTTGGAGCAAATTCATTGGCAACTAATTTGTATAATATTGGGCTTTTATTTTTATTAGAATTCTAATAAAAAATCATGTGGCTGTGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	146776	150783	-

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	BTB
EAR motif-containing Proteins	TRAF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003205.1	PF00651.26	BTB	17	110	5.60E-14
Glyur000013s00003205.1	PF11900.3	DUF3420	199	262	4.70E-13
Glyur000013s00003205.1	PF12796.2	Ank_2	264	350	2.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.020
SRR1783600	control	20.893
SRR1783602	moderate drought stress	24.409
SRR1811619	moderate drought stress	24.292

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.691
DRR006520	Root Summer glycyrrhizin high producing strain	21.648
DRR006521	Root Winter glycyrrhizin high producing strain	7.384
DRR006522	Root Winter glycyrrhizin high producing strain	7.166
DRR006523	Root Summer glycyrrhizin low producing strain	23.407
DRR006524	Root Summer glycyrrhizin low producing strain	23.679
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.567
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.533

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.487
SRR2868004	Drought Stress (root)	7.370
SRR2967015	Control (root)	6.465

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.436
SRR9715740	Leaf	0.256
SRR9715741	Leaf	0.550
SRR9715739	Root	9.435
SRR9715742	Root	8.720
SRR9715743	Root	8.426

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.284
SRR8749028	MeJA induced 9h	10.593
SRR8749029	MeJA induced 9h	7.075
SRR8749030	Uninduced	7.520
SRR8749031	Uninduced	5.052
SRR8749032	Uninduced	2.556

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.991
SRR8400027	Control - Root	15.481