Gene detail

Gene detail information of Glyur000013s00003199.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14800.1	1.00E-101	pyrroline-5- carboxylate (P5C) reductase
NR	XP_004493414.1	0	PREDICTED: pyrroline-5-carboxylate reductase-like [Cicer arietinum]
COG	YP_008070955.1	1.00E-76	pyrroline-5-carboxylate reductase [Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1]
Swissprot	tr\|Q04708\|P5CR_PEA	2.00E-177	Pyrroline-5-carboxylate reductase
trEMBL	tr\|K7KEQ2\|K7KEQ2_SOYBN	7.00E-175	Pyrroline-5-carboxylate reductase {ECO:0000256\|RuleBase:RU003903}

Sequence

Transcript Sequence

>Glyur000013s00003199.1
GGCCNATATATCAGTGCGTCGTCCACTTCACTACTTGCTTCCCTAACTTACTGGAGCAGCAACACTTTAGAAATCGACACTGATTTCTCTGCCATCCATATAACCAACAATGGAAATCGTTCCGATCCCCTCCGATTCCTTCACTCTTGGCTTCATCGGCGCCGGCAAAATGGCCGAGAGCATTGCCAGAGGCGCCGTCGGGTCCGGCNTCTTGCCTCCTTCCCGCATCCGCACCGCTCACTCCAACCCCGCTCGCCGCGCCGCCTTCGAATCCATCGGCATCACCCTCCTCCCCTCAAACGACGACGTCGTTCGAGAAAGCAACGTCGTCGTTTTCTCGGTCAAACCTCAAGTAGTGAAAGACGTGGTGTTGAAATTGAAGCCNCTTCTGACGAAAAATAAGCTTTTGGTTTCGGTTGCTGCTGGAGTCAAGTTGAAAGATCTTCAGGAATGGGCTGGGAGCAGCAGATTTATAAGGGTAATGCCTAATACACCAGCTGCAGTTGGCGAGGCAGCGTCAGTTATGAGCTTGGGAGGAGCTGCAACAGAAGAAGATGGAAATCTTATAGCCAAATTATTTGGGTCAATTGGCAAAATATGGAAAGCTGATGATAAGTTTTTTGATGCAATAACTGGCCTGAGTGGCAGCGGTCCTGCTTATATTTATTTAGCAATAGAGGCTCTGGCTGATGGAGGAGTAGCAGCTGGTCTACCACGTGATCTTTCATTAAGTCTAGCTTCTCAGACTGTATTAGGAGCAGCATCAATGGTCACCCAAAGTGGGAAGCACCCAGGACAGCTCAAGGATGATGTTACTTCTCCTGGTGGGACAACTATTGCGGGCGTTCATGAGTTGGAAAAAGGTGGGTTCCGTGGAACACTGATGAATGCTGTTGTTGCTGCTGCTAAACGCAGCCGGGAGCTTTCCTGAATCTAGAGATGAGGATTCTACGTTTTTTAGGCGAAAAAATGATCTCAGTAGAATTTATTTTCTGCTTATACTATGTGAAATTAGGGCCCTTCTTTGAGATGAGTAAATCTTGCGAGAATGTTTGGCCACAGCAAAATTCTTCTTTTTTCAACGCTACTAGGTATTTATTAAGAGTTTGGCCGATTAGCATAGCGTGATAAGTCAGTTTCGCTAGGATGGAATTTGCTCTTGCAAATTATATTACTGAACACATTATATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	114218	118146	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00286	proC	EC:1.5.1.2	Biosynthesis of amino acids	map01230
			Arginine and proline metabolism	map00330

Gene Ontology

biological_process

GO:0006561 proline biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0004735 pyrroline-5-carboxylate reductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003199.1	PF03807.12	F420_oxidored	13	106	6.90E-20
Glyur000013s00003199.1	PF14748.1	P5CR_dimer	168	272	1.30E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	82.734
SRR1783600	control	82.828
SRR1783602	moderate drought stress	71.951
SRR1811619	moderate drought stress	71.482

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	76.453
DRR006520	Root Summer glycyrrhizin high producing strain	75.985
DRR006521	Root Winter glycyrrhizin high producing strain	20.984
DRR006522	Root Winter glycyrrhizin high producing strain	20.804
DRR006523	Root Summer glycyrrhizin low producing strain	31.252
DRR006524	Root Summer glycyrrhizin low producing strain	30.671
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.059
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.408

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.046
SRR2868004	Drought Stress (root)	37.587
SRR2967015	Control (root)	35.388

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.199
SRR9715740	Leaf	32.139
SRR9715741	Leaf	31.778
SRR9715739	Root	50.375
SRR9715742	Root	44.285
SRR9715743	Root	42.773

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.901
SRR8749028	MeJA induced 9h	13.943
SRR8749029	MeJA induced 9h	16.610
SRR8749030	Uninduced	5.786
SRR8749031	Uninduced	2.936
SRR8749032	Uninduced	4.052

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.261
SRR8400027	Control - Root	44.990