Gene detail

Gene detail information of Glyur000013s00003196

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G41380.1	5.00E-88	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	AFK45765.1	1.45E-154	unknown [Lotus japonicus]
COG	YP_007319296.1	2.00E-52	hypothetical protein FAES_0692 [Fibrella aestuarina BUZ 2]
trEMBL	tr\|I3SZS3\|I3SZS3_LOTJA	5.00E-155	Uncharacterized protein {ECO:0000313\|EMBL:AFK45765.1}

Sequence

Transcript Sequence

>Glyur000013s00003196.1
GAAACCACGTGAAGGTCTTATTCATCTGATTTATAAGTAGTGGAGTGCATTAGGCGAGGCAATTACAAATTCGATTCATCTGAGTATTATTATTATTAGGAAATTGGGAGAAATTAAAGAGAGAGATGGCAGAGCTATTTGTGAATCAGGCAAAGGAATACGCAGGTGCAAGGCCAAGTTATCCACCACAACTCTTCCAATTCATAGCTTCTAAAACTCCCTCTCACAACCTCGCTTGGGATGTTGCCACCGGAAGCGGCCAAGCTGCCAAATCTTTGGCTGCAATGTACAAGAATGTCATAGCAACGGATGTTAGTGAGAAACAGCTCGAATTTNCAGCCAAGCTCCNAAATGTGAGATATCAGCACACCCNTTCAACCATGTCAATGGCCGAGCTTGAACAAAAGGTGTCACNTGAGGGAACCATAGACCTTGTGACCATTGCCCAAGCCCTTCACTGGTTTGACCTCCCAACCTTCTACCAACAAGTCAAGTGGGTTCTCAAGAAACCNNATGGGGTCATTGCTGCTTGGTGCTACAATTTGCCAAGAGTCAGTGATGCAGTGGATGCTNTCCTTGATCAATTCTATTCTTTTGACTCGAAACCTTATTGGGACCCAGCACGTCAATTGGTTGATAACAACTATNGAAGNGTTGATTTCCCATTTGANCCTGTGGATGGAGCTGATCACACGGGACCGTTTGAGTTTGTGACAGAGACTTCGATGGGTTTCGATGNTTTCTTGACNTATTTAAGATCATGGTCAGCATATCAGACTGCAAAGGAGAAAGGATTGGAGCTTCTTGGGGAGGANGTGGTTGGAAAATTCAAGCTTGCTTGGGGAGAAGATGNCAAAAAGACTGCTAAGTTTCCAATATATCTTAGAATTGGAAGAGTAAAGCANGCCTGAAAATATGTAATAGTTACTATTACTTGTTCTTACTTTGGGGGAGGTGGGATATGAAGCATCCTTTATTCATTANTTAAATAAGTTGGCTTCATTTATACCATATGAATCTAAGTTATAAATTGTAATCATGGTCGAAATGGCGATTATGTTGTGATCTTTGATGTTGTTATGGTCCGCAAAGAGTTCAAAAGTATTGACATTATGGCCATAATCAAGATCATAGGCCACAATTTAAAACTTTGATTTGAGCCATTGAGCTAGCTATTTGGAATAATTCTAGAGGGGGAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	96715	98304	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003196.1	PF08241.7	Methyltransf_11	39	128	8.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.486
SRR1783600	control	0.383
SRR1783602	moderate drought stress	0.206
SRR1811619	moderate drought stress	0.220

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.496
DRR006520	Root Summer glycyrrhizin high producing strain	0.609
DRR006521	Root Winter glycyrrhizin high producing strain	4.135
DRR006522	Root Winter glycyrrhizin high producing strain	3.615
DRR006523	Root Summer glycyrrhizin low producing strain	0.657
DRR006524	Root Summer glycyrrhizin low producing strain	0.502
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.601
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.990

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.637
SRR2868004	Drought Stress (root)	6.041
SRR2967015	Control (root)	5.789

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	93.380
SRR9715740	Leaf	88.683
SRR9715741	Leaf	105.186
SRR9715739	Root	1.182
SRR9715742	Root	6.546
SRR9715743	Root	5.295

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	79.181
SRR8749028	MeJA induced 9h	102.160
SRR8749029	MeJA induced 9h	153.262
SRR8749030	Uninduced	150.257
SRR8749031	Uninduced	215.870
SRR8749032	Uninduced	163.795

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.655
SRR8400027	Control - Root	3.091