Gene detail

Gene detail information of Glyur000013s00003192

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57070.1	3.00E-84	Glutaredoxin family protein
NR	XP_007162117.1	0	hypothetical protein PHAVU_001G125300g [Phaseolus vulgaris]
Swissprot	tr\|Q9FLE8\|Y5986_ARATH	3.00E-46	Uncharacterized protein At5g39865
trEMBL	tr\|V7CYX8\|V7CYX8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW34111.1}

Sequence

Transcript Sequence

>Glyur000013s00003192.1
ATGGGTTGCTCAGCCTCAAAAACCATCACCATAGTCGCCAACAAACATCCAGAGGATCCATCTCCCTCTATTTCCCTCGCATCTTCTTCTTCTCCTTCATCTTCTTCCTCTTCCTTTTCTTCTTTTCCTTCTAATTCTGCTTCACAGTATAACTCAAATTTTTCTTCACCACCAGTTCGGAGAGCTTTGTCGCTCACAATGCCTCTTGTACATCACCCTCCAACTAGAAAGGGTGACACCAACCACCTTGTCTCCCTCACCTCCACTACCTATGGTTCTCTACTCTTAATTGACCAAAAAGGCCCCAACTTTACCCACAATGATGAACCCCATCTCACCAAAAGCCCTCAAAAATCAAACCCAGAAGAACAATCACTGTCCCCTGATTCTGTCATCAACACTTGGGAACTCATGANTGGCTTGGATGAAATTGAAGAAGAACAAGATTCCCATGATGACNCTGCCAAGCCTCATCATCATCATCATGCCTCCATTTTCTCAGACAAACCCAGTTCATGCAGGTACACAACATTTGATGGGTCTGCAAGGAAGAAACTACTTGATTCATTTGAATCACTGAGATCCNCAGAAGCAGCAGCCACGGAAAAACCTTCTTTCAAGAAGCCACTATGGCAGCATTTATCAGAAGAAGCCTTGCTTGCAAANTTGGACCCAAGTGTGGCTTGGAGTTACCGGAGAGCACTGTCATCAAGACAACTAGGTAGCAACATCAACAACAACAACCTATGCAGAGGTTTAAGGTCAATGGGGTCAAGCCCTTTGAGTTCTTCTTCTTCTTTTTCTTCTTGTTCTCTATTTGCNACTAATAATAACAGTACTTTGTGCTGTTTGGCTGGCACTGAAGACAGAATAGTGGTTTATTGCACGAGTTTGAGAGGGATCAGAAAGACCTATGAAGATTGTTGTTCAGTGAGGATGATATTGAGGGGATTTAGAGTTGCAATTGATGAGAGGGACATCTCCATGGACTCATCTTATAGGAAGGAGTTGCAGAATGCACTTGGTGTTGGTGGAAGCAAAGCTGTGACCTTGCCACAGGTCTTTATGAGAGGAAGGTATGTGGGGAATGCAGAGGTGGTGAAACAGATGAATGAATCTGGAGAATTGGCAAAACTTTTGAAGGGTTTTCCAACTCAGGATCCTGGGTTTGTGTGTGACAACTGTGGAGATGCAAGGTTTGTGCCATGTCCCAATTGCAATGGTAGCAGGAAGGTGTTTGAGGAGGAAGACGGAGGATTGAGAAGGTGCCCGAATTGTAATGAGAATGGCTTGATAAGATGCCCAAGTTGCTGCTCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	80570	81889	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0045454 cell redox homeostasis

molecular_function

GO:0009055 electron carrier activity

GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003192.1	PF00462.19	Glutaredoxin	292	361	1.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.360
SRR1783600	control	0.413
SRR1783602	moderate drought stress	0.672
SRR1811619	moderate drought stress	1.264

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.677
DRR006520	Root Summer glycyrrhizin high producing strain	1.689
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.752
DRR006524	Root Summer glycyrrhizin low producing strain	0.754
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.792
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.590

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.620
SRR2868004	Drought Stress (root)	0.458
SRR2967015	Control (root)	0.973

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.728
SRR9715740	Leaf	0.494
SRR9715741	Leaf	1.018
SRR9715739	Root	0.602
SRR9715742	Root	0.453
SRR9715743	Root	0.511

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.054
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.048
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.820
SRR8400027	Control - Root	2.637