Gene detail

Gene detail information of Glyur000013s00003187

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57040.1	6.00E-65	response regulator 9
NR	XP_007162123.1	5.80E-136	hypothetical protein PHAVU_001G125800g [Phaseolus vulgaris]
COG	YP_723495.1	9.00E-16	adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|O80366\|ARR9_ARATH	1.00E-102	Two-component response regulator ARR9
trEMBL	tr\|V7CVB1\|V7CVB1_PHAVU	2.00E-136	Uncharacterized protein {ECO:0000313\|EMBL:ESW34117.1}

Sequence

Transcript Sequence

>Glyur000013s00003187.1
TATATAAATAAAGGTCACCAGACTCACCACTCTCAACAACCCAAAAAATATTCACTAGGATTTATTTTCTTTATTTTATTCATTCATTATATGTCCCTAGTCTTTATCTTATAATTTTGCATTGCTTGCCCTGTAATTCAAGATCAATTTGGAAAATTTGCCAAGATTTGGGATGAAATCTGGTCGGATCTTGCTTTGTGGGATGGGGATTTTGGTGGGACTTATTTCAATACAAAGCTCTTCCTCCAATCTCATTACCCTTCCATAAAGAAAAAAACTCAAACACAAAAAGCCATCCTTCCAAGTTCCAACTTCAGTGTAAGGGGAGGAACAAAGCAAAAAAAAAAAGGAACACACACCAGTTACACACCACCCTCTTTCTAGTTCATAGCTTCTTCACTTCATCTTCAATCCATTGAACTACTTAAGGTTCCACTTTGCATCATTGAGTTTGGAGCAAAATGGGGATGGCTGCAGATTCGCAGTTTCATGTGTTGGCTGTTGATGACAGCCTTGTAGATAGGAAGCTGATTGAGAGGCTGCTCAGAACCTCTTCCTATCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTCTGGGCCTGCGTGAGAATGATGAGAGCAACCCAAATACACCATCTGTTTCTCCTAATAATCATCAGGAGGTGGAGGTGAATCTTATTATAACAGACTACTGTATGCCTGGCATGACAGGCTATGATTTGCTTAAGAAAATCAAGGAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCATCTGAGAATGTGCCTTCAAGGATTAGTAGATGCTTAGAGGAAGGAGCAGAGGAATTTTTCTTGAAGCCTGTGAGGCCATCAGATTTGAATAAACTCAAACCCCACATGAAGAAAACCAAGTTGAAAGATCAAAAGATACAAGAAACAGCAGAAAAGGTTGAAAACTCAGAAGAAGTTCAACAGCAGCAGCAGAAGCCACAACAAATCCAAAATGATCAGCATCAAGCACCAAAATCCCATTATCCAGAGTCCGAGTCAGAGTCACATTCACAGCCAACTATAGATCAACAGCAACAATCACTTCCACAAGCCAACAATAACAAGAGAAAGACCATGGAACAGGGTCTTTCACCTGAGACTGACAGAACGAGACCAAGATACAGTGGCATAGCCACTGTGGTATGACGATGATAAAATCATTTTGACAAATAATTTTTCTTGAATTTCAAAGTGTAATTCTCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	57394	59479	+

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000160 phosphorelay signal transduction system

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003187.1	PF00072.19	Response_reg	11	139	5.60E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.655
SRR1783600	control	13.588
SRR1783602	moderate drought stress	10.124
SRR1811619	moderate drought stress	10.178

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.114
DRR006520	Root Summer glycyrrhizin high producing strain	47.950
DRR006521	Root Winter glycyrrhizin high producing strain	14.730
DRR006522	Root Winter glycyrrhizin high producing strain	14.122
DRR006523	Root Summer glycyrrhizin low producing strain	21.722
DRR006524	Root Summer glycyrrhizin low producing strain	21.817
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.441
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.291

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.407
SRR2868004	Drought Stress (root)	41.873
SRR2967015	Control (root)	50.598

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.363
SRR9715740	Leaf	4.616
SRR9715741	Leaf	2.802
SRR9715739	Root	0.466
SRR9715742	Root	4.916
SRR9715743	Root	4.398

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.909
SRR8749028	MeJA induced 9h	1.368
SRR8749029	MeJA induced 9h	0.544
SRR8749030	Uninduced	0.456
SRR8749031	Uninduced	0.337
SRR8749032	Uninduced	0.182

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.858
SRR8400027	Control - Root	50.938