Gene detail

Gene detail information of Glyur000013s00003183

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G41290.1	2.00E-52	strictosidine synthase-like 2
NR	XP_004517249.1	2.92E-104	PREDICTED: adipocyte plasma membrane-associated protein-like, partial [Cicer arietinum]
COG	YP_002602176.1	6.00E-23	hypothetical protein HRM2_08990 [Desulfobacterium autotrophicum HRM2]
Swissprot	tr\|Q9SLG8\|SSL2_ARATH	1.00E-63	Protein STRICTOSIDINE SYNTHASE-LIKE 2 {ECO:0000303\|PubMed:10777701} (Precursor)
trEMBL	tr\|V7CVF6\|V7CVF6_PHAVU	4.00E-87	Uncharacterized protein {ECO:0000313\|EMBL:ESW34119.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	32530	34862	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function
GO:0016844 strictosidine synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003183.1	PF03088.11	Str_synth	74	104	3.00E-05

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	1.391
SRR1783600	control	1.826
SRR1783602	moderate drought stress	1.833
SRR1811619	moderate drought stress	1.547

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.244
DRR006520	Root Summer glycyrrhizin high producing strain	3.716
DRR006521	Root Winter glycyrrhizin high producing strain	0.179
DRR006522	Root Winter glycyrrhizin high producing strain	0.173
DRR006523	Root Summer glycyrrhizin low producing strain	5.572
DRR006524	Root Summer glycyrrhizin low producing strain	6.898
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.169
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.189

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.509
SRR2868004	Drought Stress (root)	0.251
SRR2967015	Control (root)	0.115

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.455
SRR9715740	Leaf	1.835
SRR9715741	Leaf	1.143
SRR9715739	Root	2.971
SRR9715742	Root	1.370
SRR9715743	Root	1.863

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.226
SRR8749029	MeJA induced 9h	0.033
SRR8749030	Uninduced	0.069
SRR8749031	Uninduced	0.004
SRR8749032	Uninduced	0.194

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.103
SRR8400027	Control - Root	2.314