Gene detail

Gene detail information of Glyur000012s00000626.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49620.1	7.00E-63	myb domain protein 78
NR	KEH32365.1	1.48E-138	myb transcription factor [Medicago truncatula]
Swissprot	tr\|Q9LDE1\|MY108_ARATH	9.00E-80	Transcription factor MYB108
trEMBL	tr\|A0A072V2Q6\|A0A072V2Q6_MEDTR	6.00E-139	Myb transcription factor {ECO:0000313\|EMBL:KEH32365.1}

Sequence

Transcript Sequence

>Glyur000012s00000626.1
ATGGATGTAAAAGGGAGACCGAGAGGAGGAAACAATATCAACAACAACAACAGCAACAACACCAATACTCTGATGAGTAGTAGTAGTAGTAGTAGTAGTGGTGGTGAAGTAGACGAGATGGACCTTCGAAGAGGCCCTTGGACCGTCGATGAGGACCTCACCCTCATGAATTACATTGCCACTCATGGCGAAGGTCGCTGGAATACCCTCGCCCTCTCTGCCGGCCTCAAACGAACGGGAAAGAGTTGCAGATTGAGGTGGCTGAACTATCTCCGTCCCGATGTTCGACGTGGAAACATCACACTCCAAGAACAACTTTTGATCCTCGAGCTCCATACTCGCTGGGGTAACCGGTGGTCGAAAATTGCGCAATATTTACCGGGAAGAACCGATAATGAGATCAAAAACTATTGGAGAACTCGTGTCCAAAAACTTGCCAAACAACTGAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGGCTAGTTGAACGCATTCAAGCGGCCTCCACAACCACCGCCTCAAGTTCTCCAACCGTCACCGCCAACAACGGATACACTGCCTACAGCAACGACCACGGTAACGGAAAAATGGAATCAAGTACTCCGGCAGTTATGAACAACGAATTTGTGGGTTCACGTGTTACGCACAGTTACACCCCGGATAACAATAATAGCACTGCCACATCATCGGACTCGTTTGGGACTCAGGTCTCAACAATCTCGGATTTTACGGATAATTACTACACTACTGTCCCTGTTTGTAACAACGATAACTCTAATCCTAATCCTGATTCGGATTATTGTTATCAATTACCCTCTCAGCTGCAGGTTAACTACTCGGATTGCATCACAAGCCCGTCTGGGTTATTGTTACCCCAGGCCCAGGGAGTACTGGATTTCCACCACGTGGAGCCAAACACGCCGTGGATGCAAAACGGGGACTCCTCCGACATTTTTTGGAACGCTGAAAACGTGTTGTTTTTGCAACAACAACTCATGAATGACACCATGTAAAAACAGAGTGGGAACCATGTCAAATATTACAGGAAGATGATGAAGGGAGAAATTAACATCAAATAAAATAAATTCACATGTAGGACACACATAGGATGTATCAACATATAAAATTGTGAATTAATTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	666459	668140	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000626.1	PF00249.26	Myb_DNA-binding	44	91	6.50E-14
Glyur000012s00000626.1	PF00249.26	Myb_DNA-binding	97	140	2.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.040
SRR1783600	control	1.033
SRR1783602	moderate drought stress	1.044
SRR1811619	moderate drought stress	1.077

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.247
DRR006520	Root Summer glycyrrhizin high producing strain	0.183
DRR006521	Root Winter glycyrrhizin high producing strain	4.495
DRR006522	Root Winter glycyrrhizin high producing strain	4.464
DRR006523	Root Summer glycyrrhizin low producing strain	2.215
DRR006524	Root Summer glycyrrhizin low producing strain	2.298
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.471
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.237

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.384
SRR2868004	Drought Stress (root)	5.619
SRR2967015	Control (root)	9.254

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.869
SRR9715740	Leaf	0.961
SRR9715741	Leaf	2.693
SRR9715739	Root	0.808
SRR9715742	Root	2.016
SRR9715743	Root	1.825

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	209.509
SRR8749028	MeJA induced 9h	265.748
SRR8749029	MeJA induced 9h	155.498
SRR8749030	Uninduced	53.759
SRR8749031	Uninduced	25.279
SRR8749032	Uninduced	54.962

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.980
SRR8400027	Control - Root	0.615