Gene detail

Gene detail information of Glyur000012s00000622

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G30510.1	1.00E-155	ribosomal protein S1
NR	NP_001239880.1	0	uncharacterized protein LOC100812847 [Glycine max]
COG	YP_007046118.1	5.00E-93	30S ribosomal protein S1 [Cyanobium gracile PCC 6307]
Swissprot	tr\|P29344\|RR1_SPIOL	0	30S ribosomal protein S1, chloroplastic (Precursor)
trEMBL	tr\|C6T883\|C6T883_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G04190.1}

Sequence

Transcript Sequence

>Glyur000012s00000622.1
ATGGCGTCTCTGGCTGTGCAATCCAGTACTGGGCTGAGGTGCTCCCCACTCTCTTCTTCCCCCCGCTTCTCCAAACCCTCATTCTTATTCTCCCGTTGGGGCCAATCCCAGAAGAAGCGCGTTCCCGTATCGAACTCGATTGCAATCGCCAATGCAAAGAACAAAGAGAGGCTGAAGCTTAAAGAACTATTCGATGAAGCCTACGAGAGGTGCCGCACTGCTCCCATGGATGGCGTCTCCTTCACCCTCGAACAGTTCACCGCCGCCCTCGAGAACTACGACTTCGATTCTGAAGCTAATGGAGCATTTGTTGATATTACTGCAAAGTCGTCGGCATACTTGCCCCTGCAGGAGGCGTGCATCCACAGGGTTAAGCATGTGGAGGAAGCTGGCATAGTTACTGGGTTGAGGGAGGAGTTTTTGATCATTGGTCAAAATGGGGCAGATGACAGCCTGGTTTTGAGTTTAAAGTCTATGCAGTATGACCTTGCATGGGAACGTTGTAGACAACTCCAAGCAGAAGATGTTGTTCTCAAGGGTAAGGTTGTTGGCGCAAACAAAGGTGGAGTGGTGGCTGAGGTGGAAGGCCTTAGAGGGTTTGTTCCATTCTCACAGATACCAACGAAATCAAATGGAGAAGAGCTTATTGGGAAGGTTCTTCCTCTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTCCTCAGTAACCGCAAGGCCATGGCTGACAACCAGGCACAGCTAGGAATTGGATCTGTAGTTACCGGCACCGTTCAGAGCCTAAAGCCATACGGCGCCTTCATCGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAAATCAGTCATGACCGTGTAGCTGATATTGCAACTGTTCTTCAACCTGGTGATACACTGAAGGTGATGGTCTTAAGTCATGATAGGGAGAGAGGCAGAGTAAGTCTTTCCACAAAGAAGTTAGAACCCACACCTGGAGACATGATCCGCAATCCAAAGCTTGTCTTTGAGAAGGCAGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCAGACATGCTCAGGTTCCAGCCTGAGAGTGGATTAACTCTCAACAGTGACGGGATTTTGGGACCACTTGATTCAGACTTGCCTGAGGAGGGACTTGATCTGAGTGAGGTACCACTAGCTGAAGAATCATGATTGAATTGACAATTACGTGGCTTTTCTCTTCTCCCTAACTCATGCGCATGCATTGTTATGATGTTGCTTGTGACTATAAAATATTATTGCAGAATGATGTTTTGATGTCATTGTATTATTGTAAGTTAAATAGACAGAACTATTAATAAATTTTCATTACACTATGTAAATGTTTCTTTCGTTGGAACATATTCATCCTTCCATCAGCATAGAAGGAATGTATTCATTGTTCTGTAGCTACTTGAGCATACTTACTCAAACACTTCTTTGTCTTCATAACATAGTTCCAGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	642870	646299	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000622.1	PF00575.18	S1	172	239	2.70E-12
Glyur000012s00000622.1	PF00575.18	S1	250	320	4.00E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.370
SRR1783600	control	11.185
SRR1783602	moderate drought stress	16.615
SRR1811619	moderate drought stress	16.611

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.046
DRR006520	Root Summer glycyrrhizin high producing strain	10.757
DRR006521	Root Winter glycyrrhizin high producing strain	3.389
DRR006522	Root Winter glycyrrhizin high producing strain	3.249
DRR006523	Root Summer glycyrrhizin low producing strain	26.788
DRR006524	Root Summer glycyrrhizin low producing strain	27.836
DRR006525	Leaf Summer glycyrrhizin high producing strain	129.644
DRR006526	Leaf Summer glycyrrhizin high producing strain	129.107

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.564
SRR2868004	Drought Stress (root)	11.526
SRR2967015	Control (root)	11.445

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	54.281
SRR9715740	Leaf	64.715
SRR9715741	Leaf	36.538
SRR9715739	Root	8.354
SRR9715742	Root	8.114
SRR9715743	Root	6.140

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.449
SRR8749028	MeJA induced 9h	9.195
SRR8749029	MeJA induced 9h	5.629
SRR8749030	Uninduced	7.396
SRR8749031	Uninduced	2.078
SRR8749032	Uninduced	9.150

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.755
SRR8400027	Control - Root	11.458