Gene detail

Gene detail information of Glyur000012s00000619

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G48040.1	6.00E-112	Protein phosphatase 2C family protein
NR	XP_004508104.1	0	PREDICTED: probable protein phosphatase 2C 13-like [Cicer arietinum]
COG	YP_003709340.1	2.00E-18	serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q9LNF4\|P2C13_ARATH	9.00E-148	Probable protein phosphatase 2C 13
trEMBL	tr\|A0A072UTK8\|A0A072UTK8_MEDTR	0	Protein phosphatase 2C-like protein {ECO:0000313\|EMBL:KEH32373.1}

Sequence

Transcript Sequence

>Glyur000012s00000619.1
CAAATATACCCCTTCCGTTCGAATGAGATTTTGGGGCAAACCAGGGGTATTATTGACTTTTCATTAAACACGCACTAACGATATTTGTGCTTGTACAACTTACAAGCGCGTCCAACTGAAGCAGTGCGAAGATTTCATAGCAAGCAGAGAGACAGAGAGAGAAAGAGAGAGAAAAACCCTAATTTTGTTACTACTCTTCTTCATCTTCAAAACAAACCCCAATTCAGCGTCGAATTCGAACGCTTCAAAATTCGATTTGGGAATTTGAAACCCTAGCTATTGTGTGTTTTTGGGAAAGAGATTGCAAAACGGCGTGTGAAGATGGTAGCGGAAGCGGAGATTATCTGTCAGCAGAGCATTTCGATGTTGGATGTGAAGTATCACCTTTGCGTGGCACAAGAACACAGCGTCAACGTTGAGGTCTCACCCACCTCCCCTACCCCTCCGTCTGTCCCCATCTTTGGCCAAGCCGTGAGTTGCTCTGAGATCATTGAAGATTCCATTTTGCAGACCGCTGCAAAGATGTTTATCCCAAATGTTCGTTCTGGTAGCTATGCTGACATTGGACCACGGGGATCTATGGATGATGAACACATTCAGATAGATGATCTAGCTGGCCACCTTGGATTTGTGTTCAAGTACCCAACACCAAGTGCGTTTTATGCGGTTTTTGATGGGCATGGGGGGCCTGATGCAGCTGCCTTTGTCAAGAGGAATGCCATGAGATTATTTTTTGAAGATGCTGACATGCTGCAATCATACGATACTGATTCGTTTTTTCTAGAGAAGTTGGAAGATTCTCATCGGAGAGCCTTTTTACGGGCAGATCTTGCCTTGGCTGGTGAACAAAGTGTTAGTAGTTCATGTGGGACTACAGCATTGACTGCCCTTGTACTTGGAAGGCATTTGCTTGTTGCTAATGCTGGCGACTGTCGAGCAGTTCTTTGCAGGAGAGGTACAGCTGTCGAGATGTCTCAAGACCATAGGCCGAGTTATTTGCCAGAACGAAGGAGAGTGGAGGAGTTAGGTGGCTTCNTTGACGATGGTTATCTCAATGGTTATCTTTCAGTAACCCGTGCCCTTGGGGATTGGGACCTAAAATTTCCACTTGGTGCTGCATCTCCTCTTATTGCTGAGCCAGATCTTCAACTGGTTACATTGACAGAAGATGATGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGCCTTGTTCGCCGTGGACTAAGAAGGCACAATGACCCACAGCAATGTGCCAGAGAGCTAGTCAAGGAAGCATTGCGCCTAAATACATCAGATAATCTCACTGTGATTGTTATATGTTTGTCCTCCGTTGAAAGCATTGCTGAATCATGTCCGCCCCAAAGGCGAAGATTCAAAGCATGCAGCCTGTCTGAAGAGGCTCGTAATAGATTGAAGAGCTTGATAGAGGGAAATTGAATGTAAATGCAATTCTTGTGATTCACAAATGTTTCTTTCGTTAAAAGATTAATCTGTTTTTAAGGCTGTTTCAGAGATTTAGTAAAAGCGGCCAGCAGTTTTGTAGGGAGGATATTTGGTGAGGGGTAGAGAGGGTTTAGCCCTATTTAATTAGGTGGTGTTTTCTGGGTTATGTTGGTATATGTAGAGACAATTGTAGCNAAATTTTGGCGGATTAGATCTATAGTCCCTTTCAGGGTGGTTTTGATTTCACATTATTGTTGCTTCTGTAAATAGAAATGATTTACACTTCTCAGCAATTCTCTGGGGGTGAATGCCACCAGGATTTAATATTCGTTTCAAATTTTATCCTGTATTTATTTCAGTGGCAGTTTGTTTGAGGTGAATTTTTCTTGTTTGTACCTTCTTTATTGTTCTTGGATCTCTCTCCCAGGTTTCATGGATGGGATATGCTTGGCCCATCTTATCTCTACAGGCCTGTGACATGCGATAATATCATCCTTTGGCTTTGGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	630344	632897	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006470 protein dephosphorylation

molecular_function

GO:0003824 catalytic activity

GO:0004722 protein serine/threonine phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000619.1	PF00481.16	PP2C	85	336	4.60E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.983
SRR1783600	control	6.017
SRR1783602	moderate drought stress	5.166
SRR1811619	moderate drought stress	5.191

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.723
DRR006520	Root Summer glycyrrhizin high producing strain	24.274
DRR006521	Root Winter glycyrrhizin high producing strain	28.273
DRR006522	Root Winter glycyrrhizin high producing strain	27.759
DRR006523	Root Summer glycyrrhizin low producing strain	28.352
DRR006524	Root Summer glycyrrhizin low producing strain	28.368
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.295
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.539

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.333
SRR2868004	Drought Stress (root)	23.995
SRR2967015	Control (root)	26.859

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.885
SRR9715740	Leaf	59.939
SRR9715741	Leaf	58.348
SRR9715739	Root	21.560
SRR9715742	Root	36.836
SRR9715743	Root	32.092

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.221
SRR8749028	MeJA induced 9h	60.556
SRR8749029	MeJA induced 9h	51.012
SRR8749030	Uninduced	53.684
SRR8749031	Uninduced	63.680
SRR8749032	Uninduced	55.721

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.591
SRR8400027	Control - Root	20.735