Gene detail

Gene detail information of Glyur000012s00000617.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G06440.1	Galactosyltransferase family protein
NR	XP_003550571.2	PREDICTED: probable beta-1,3-galactosyltransferase 16-like isoform X1 [Glycine max]
Swissprot	tr\|Q9ASW1\|B3GTG_ARATH	Probable beta-1,3-galactosyltransferase 16
trEMBL	tr\|K7MJT8\|K7MJT8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G04230.5}

Sequence

Transcript Sequence

>Glyur000012s00000617.1
ATGGGAGTGCTATTGACGAATATGCACCAGTATCAGCTTCAGTGTCACTCGGTTCACATCTCAGAAGAGTTTTGGAGCATTTCGCAGCCTTCAATGGTATTGAAACGGCCATATTTAGTTCAAGGTTTACTCAAAATGAAGAAGTGGTATGGGGGCCTGTTGATCATGGCTCTTGGTATGATGTTGTTTCTACTGTACAGCCTTAAAGGAATTCAGCCACAGAAGCAGTCAGCAAAACAGTCAGCGTACGGTTTTTTCAATAACCATCCACCAAATGATTCTATTGAAGGAAGCAGCAATCTTCCAGTAAACTCTTCTGATGTGGAACTAAGAAGGGTACAAAAGCCAACAAGAAGGCCACATTTGGTACACGTTGCAGGGCTTGATGATCTATATGACATGAAAAAATTATCTGAAGGAGAGATGAATGCTGTGCTTGCTTGGACTTCTTTACACTCCTTGCTGTCGAGGTCAGATGCTTTGCCTGAAACTGCTCAAGGAGTTAAAGAGGCTTCTGTAGCATGGAAAGAGTTGCTGTCCACTGTTGAAAAGGACAAAGCCTCTAAGATTAGTAGGATAGACAGCCCAGCAAATCAAAACTGCCCATTCTCTGTGACCACACTTGGTAAGACAGTAGCAGATAGTGGGCTCACTCTGGATCTCCCTTGTGGTCTGGTTGTAGATTCTTCCATTACACTGATTGGCATCCCTAATGGACAAAACATAAGCTTTCAGATTGACCTTGCTGGGCAAGAGGTAGAAGAGGAGGCAAATCCTCTAATTATCTTGCATTATAATGTGAGTCTTCCTGGAGAAAACATGACAGAGGAACCGTATATTGTTCAAAATACATGGACTAATGATCTTGGATGGGGAAAAGAAGAAAGGTGTCCTGCTCGTGGTTCTGCTAACATCCAAAAAGTTGATGGACTTGTTCTCTGCAATGTACAAGTTGTCAGAAGTAACAACGAAGAGAATGTAAATGTGGGTCAACCTACTAGTGATATACCTTCTAATATTTCCTCAGAAAGTGCCCATAGAACTGCTAATTTCCCTTTTTCTGAGGGTAATCCTTTCACTGCCACATTGTGGGTTGGTTCAGAGGGATTTCATATGACTGTGAATGGAAGGCATGAAACATCTTTTGCATATAGGGAGAAGCTTGAACCATGGTTAGTCAGCACCATTAAAGTAGCAGGCAGTTTGAGTCTCTTATCAGTCCTGGCTAAAGGTTTACCCGTTACTGAAGATAATGATATAGTTGTTGATGTTGAGAAACTGAAGGCTCCTTCTATCCCCAGAAAAAGGCTTGTTTTGTTGATCGGAGTGTTCTCTACTGGAAATAACTTTAAGCGTCGAATGGCTCTGAGGAGGTCTTGGATGCAATATGAGGCTGTACGTTCTGGAGAAGTTGCTGTCAGATTTTTCATTGGGCTTCATAAGAACAATAGAGTTAATTTTGAGTTATGGAGTGAAGCTCAAGCATATGGAGATATTCAGTTAATGCCTTTTGTTGATTATTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTATGGGGACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCTTTTGTTAGGATTGATGAAGTGCTTTCCAGCCTCAAAGGTAAGCCATCTGAAGGCCTCTTATACGGTCTCATATCTTCTAATTCATCTCCTCATAGGGATAAAGACAGCAAGTGGTACATCAGTGACAAGGAATGGCCACATGCTACATACCCACCTTGGGCACATGGTCCTGGCTATGTCATCTCTCGTGACATAGCAAAGTTCATTGTCCAGGGTCACCAGGAAAGAAAACTCCAGTTCTTTAAATTAGAAGATGTTGCCATGGGCATATGGATTGAACAGTTCAAGAATGGTGGGAAAGAAGTGCATTATGTGAATGATGAGAGGTTTTACAATGCTGGGTGTGAATCAAATTATGTACTTGCCCATTATCAAAACCCAAGGATGGTGCTATGCCTTTGGGAGAAACTGCAGAAAGAACACCAGCCAGTGTGCTGCGAGTAGATAGCAAAGTTTCTGGGTTATAATAACTCTGTTGATTCTGAGGTTTGAGCAATATTTAAATGTTTAATTAGGTTATATGTTTGTCATCACTAATCATCTCATTTGCAATTTGTATCCTACTGTTCATTGATTTATTCATTCATTTTAACCATTTCAGTAGAAAGAATTAGTTCAACACCTGAAACTGTTTTGCTTGAAGATACCAGTGCTGTTAATTTGTTGTGCCATTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	621412	625984	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006486 protein glycosylation

cellular_component
GO:0016020 membrane

molecular_function

GO:0008378 galactosyltransferase activity

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000617.1	PF00337.17	Gal-bind_lectin	218	408	2.00E-35
Glyur000012s00000617.1	PF01762.16	Galactosyl_T	451	633	1.30E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.656
SRR1783600	control	1.720
SRR1783602	moderate drought stress	1.205
SRR1811619	moderate drought stress	1.254

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.060
DRR006520	Root Summer glycyrrhizin high producing strain	3.070
DRR006521	Root Winter glycyrrhizin high producing strain	1.244
DRR006522	Root Winter glycyrrhizin high producing strain	1.177
DRR006523	Root Summer glycyrrhizin low producing strain	1.057
DRR006524	Root Summer glycyrrhizin low producing strain	1.045
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.494
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.566

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.947
SRR2868004	Drought Stress (root)	2.771
SRR2967015	Control (root)	4.346

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.649
SRR9715740	Leaf	0.342
SRR9715741	Leaf	0.371
SRR9715739	Root	0.821
SRR9715742	Root	1.761
SRR9715743	Root	1.897

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.650
SRR8749028	MeJA induced 9h	2.999
SRR8749029	MeJA induced 9h	4.308
SRR8749030	Uninduced	0.721
SRR8749031	Uninduced	0.886
SRR8749032	Uninduced	1.253

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.883
SRR8400027	Control - Root	4.132