Gene detail information of Glyur000012s00000608 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48110.2 | 3.00E-158 | evolutionarily conserved C-terminal region 7 |
| NR | XP_006583977.1 | 0 | PREDICTED: uncharacterized protein LOC100777489 isoform X1 [Glycine max] |
| Swissprot | tr|A9LNK9|CPSF_ARATH | 1.00E-09 | 30-kDa cleavage and polyadenylation specificity factor 30 {ECO:0000303|PubMed:18479511} |
| trEMBL | tr|I1KMJ7|I1KMJ7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G36110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00012 | 544091 | 547645 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000012s00000608.1 | PF04146.10 | YTH | 386 | 529 | 6.00E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.712 |
| SRR1783600 | control | 9.659 |
| SRR1783602 | moderate drought stress | 9.819 |
| SRR1811619 | moderate drought stress | 9.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.026 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.598 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 68.273 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 66.220 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.607 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.727 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.380 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.989 |
| SRR2868004 | Drought Stress (root) | 46.483 |
| SRR2967015 | Control (root) | 40.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.182 |
| SRR9715740 | Leaf | 38.122 |
| SRR9715741 | Leaf | 37.957 |
| SRR9715739 | Root | 4.117 |
| SRR9715742 | Root | 25.579 |
| SRR9715743 | Root | 25.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.768 |
| SRR8749028 | MeJA induced 9h | 49.530 |
| SRR8749029 | MeJA induced 9h | 34.763 |
| SRR8749030 | Uninduced | 26.113 |
| SRR8749031 | Uninduced | 44.799 |
| SRR8749032 | Uninduced | 34.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.934 |
| SRR8400027 | Control - Root | 29.611 |