Gene detail

Gene detail information of Glyur000012s00000605

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17340.1	0	ARM repeat superfamily protein
NR	XP_004508096.1	0	PREDICTED: uncharacterized protein LOC101514827 [Cicer arietinum]
Swissprot	tr\|F4J738\|SAD2H_ARATH	1.00E-18	Importin beta-like SAD2 homolog {ECO:0000305}
trEMBL	tr\|I1MRW2\|I1MRW2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G04280.1}

Sequence

Transcript Sequence

>Glyur000012s00000605.1
ATGGCGGAGGTTACTCACATCGCTGAACTGCTCAACCAGACACTGAGCCCAGACGCCAACGCCGTTCGTGCCGCCACCGATGCGCTCGATCGTCTCTCCCTCACTCCTCACTTCCCTTTCTATCTCCTCTCCATTTCCACCGGAGGAGAAAATCAAGGTCAGAAAATTGCCGCTTCAACGTACCTGAAGAACCTCACGCGCCGCAACGTCGATAGCACCGGAGCTACGCCTTCGAATGTGAGCAAGGAGTTCAAGGAGCAGCTGTTGCAGGCTTTGCTTCAAGTCGAATTGCCCGTTCTCAAGATTCTAGTTGAAGTGTTCCGGATTGTCGCTGTTGCTGATTTTGTTAAACAGAGTTTGTGGCCGGAACTTGTGCCTAATCTGCAGTCTACTATCCAAAATAGCCATCTTATCAACGGTTCAAACTCCGCATGGAATACCATCAATGCACTCGTTGTTCTTCACGCACTTCTCAGACCCTTTCAGTATTTTTTGAATCCCAAAGTTGCAAAGGAGCCAGTACCACCACAGTTGGAGCTCATAGCCAAAGAAATTCTTGTGCCTTTGCTCACTGTATTCCATCAATTTGTTGAAAAGGCTTTAGCAAACCATGACAGAGCAGAAATAGAAACCGAGAAAGCCCTCCTCACTATATGTAAATGCCTACACTTTGCAGTAAGGTCCTACATGCCATCAACTTTACCTCCTCTACTGCCTTCGTTCTGTTGGGACCTAATGAGCATTTTGGGTTCTTTGAGCTTTGATTGTCTGGTCACTCAAGAAGATGGATATTTGACAAGATTGAAGACTGGAAAAAGAAGTCTTCTTATTTTCTCTGCCCTTGTCACCCGGCACAGGAAACATTCTGATAAGTTGATGCCAGAAATTATAAATTGTGCTCTAAACATAGTCAAATTTAGCAAAAATGCTAGTAAACTTCCTTTCCTATCAGAGAGACTTCTGTCCCTAGGCTTTGATGTAATTTCAAATGTACTGGAGACTGGCCCGGGGTGGCGATTAGTTTCTCCACATTTTACAACTTTATTGGAATCTGCAATTTTTCCAGCATTGATAATGAATGAGAAGGATATGTCAGAGTGGGAAGAAGACCCAGATGAGTATATACGGAAGAATGTTCCTTCAGACATAGATGAAATTTGTGGATGGAGGGAGGATTTATTCACTGCCAGAAAAAGTGCAGTAAACTTACTTGGTGTTATCTCAATGTCAAAGGGGCCACCGATGGAGACTGCCACTGACAGTTTCTCAGCTTCAACCAAGCGTAAAAAAGGTCAAAAGAACAAAAGAAACAACCAGCGCCGCTCTATGGGGGAGTTATTGGTGCTTCCATTTTTGTCTAAGTTTCCCATTCCTTCTGATTCCAATGTGTCTCAAAAGAAAATCCCGAATGATTACTTTGGTGTTCTGATGGCATATGGTGGCCTTCAAGATTTTTTGAGAGAGCAAGAATCTGGATATGTGACATCTCTGGTTCGTACACGGATTTTGCCACTATATACAGTGGCAGTGTCCCTACCATACCTAGTTGCAAGTGCAAACTGGGTACTTGGAGAACTAGGCTCCTGTCTACCAGAGGAGATGAGTGCTGATGTATATTCTCAATTGCTCATGGCAGTAGTCATGCCAGATAAGCAGGATATTTCTTGCTATCCTGTGCGGGTTTCTGCTGCTGGGGCAATTACTACACTACTTGATAATGACTACATGCCCCCTGATTTTCTACCCCTTCTCCAAGTAATAGTTAGCAACATTGGAGATGATGAGAGTGAGAGCTCCATCTTATTTCAGCTTCTCAGTTCTATTATGGAAGCTGGAGATGAGAAAGTTGCAGTCCATATCCCACACATTGTCCCAGCGTTAGTGGGTTCTGTCTCAAAATGGTTAACTGCCAATCTGGAGCCTTGGCCTCAGGTGGTTGAGCGTGGAATTGCTGCTCTGGCAGTTATGGGTCAGACATGGGAAGACTCTAGGCCTGAAGAATCTGAATCAAATGAGTCTCGTGAAAAATGGGTTGCAGGTCAAGCAGCTATTGGCAGAGCTTTTGCTGCACTCTTGCAGCAGGTTTGGCTTACACCTCTATGTACACAGGATCAACAAGACCAGAATTCTCCGACTTCATCGTGCATAGAAGAGTTGTCAACTTTACTACTGTCTGTCATGCTATGTATTGATGGTAATCACGTGATTCAAGAGCTTAAAATATCAGAGCTGCTGTCAGCTTGGGCTGAAATGATTGCAGAGTGGCATGCATGGGAAGAATCAGAGGATTTGTCAATTTTTGATGTGATTAAGGAAATTGTGAAATTAGATAGCAGATACAGGCTGAAAAACTTTCTGGTAAAAGAGATGCCTCCCCCTCCAGCTCCACCTGTGCCTAATCGCTCAGTTATAGAGGGCATTGGCACTTTCGTTTGTGAGGCCATTAAGCAATATCCTTCTGCCACATACAGAGCTTGCTCATGTGTCCATATGCTACTACATTGTCCAACCTACTCACTTGAAACTGAAGGTGTAAAGCAGTCATTGGCTATTGCTTTTAGTCGGGCAGCCTTCTCTCGCTTCATAGAAGTTCGAAGCACACCCAGTTCACTCTGGAAGCCTCTATTGCTTGCTATATCTTCATGCTATTTGTGTTATCCTGATATCATAGAAGGTATTTTGGAAAAGGGTGAAGAGGGAGGCATCACAATTTGGGCATCTGCTTTGTGTCACATATCCAGTAGCTCCTTTGAAGCTGCCGGTCTGATGGCAGAGTCTGAGATGAAGTTAATTGTGATGACACTGGCCCGATTGATTGAGCAACTTCTGAAACAAGGGAAGTCAGGGGGTGATTCAATTCAAAACTGCTTTACTTCACTGTTGGAGGTATTGGTACAGTTGAAAGAGGTACGGGATGGGAAAGGTGATGAAGAAGCAGCTGAAGAGGCTGAAAATGATGATGAGGACGAGGATGAAGACAGTGATGACTCCGAAGATTATGATGAGGACTCTGAGGTTGAGGAATATGAAGAAACAGAAGAAGAATTTCTTAATAGGTATGCCAAAGCTGCCGAGGCATTGGAAAATGGTTCAATTATTGAAGAGGGGGATGATGAAGATCAAGAAGTGGAGATGGAATTAGGTCAATTACTTGACATTGATGAGCAAAAAGTTGTGCTGTCCTTGATAGACAAATACAACCATGTTCTTATCCAAGGACAAGGTTTGCCCCCACAGCTCATCATGAATTTTCTGAATGCCTTTCCCGGGTATGGTTTGTATTTCCAGCAATACAGATAAGTATGGTTTATGTTCTATATTGTCAGTGTCAGTGTCAGTGTTGTGTGTAAATTAGATTTTTCACCAGAAAAGTTGGGGTTTTGAAATGAATGTAGAAAGTAAAGTAGAACAGTTATTATTTTTTTTGCCGAGGGGGTGGGGATTTGGCTAGTTGCAGTTCTCATTGATCTGTATAATTTTTATTCTTTTAGTTGAGGAAGAGAGCAGGCTGTTACTTTACCATGTCGAGATTTCGATTCGAGAGTTGAGGCAAAATGTATTGTTGAACGATTTTTCAGATTTGAGTTATTTATTAATGATTTTCTGCGCGGTGGC

Protein Sequence

>Glyur000012s00000605.1
MAEVTHIAELLNQTLSPDANAVRAATDALDRLSLTPHFPFYLLSISTGGENQGQKIAASTYLKNLTRRNVDSTGATPSNVSKEFKEQLLQALLQVELPVLKILVEVFRIVAVADFVKQSLWPELVPNLQSTIQNSHLINGSNSAWNTINALVVLHALLRPFQYFLNPKVAKEPVPPQLELIAKEILVPLLTVFHQFVEKALANHDRAEIETEKALLTICKCLHFAVRSYMPSTLPPLLPSFCWDLMSILGSLSFDCLVTQEDGYLTRLKTGKRSLLIFSALVTRHRKHSDKLMPEIINCALNIVKFSKNASKLPFLSERLLSLGFDVISNVLETGPGWRLVSPHFTTLLESAIFPALIMNEKDMSEWEEDPDEYIRKNVPSDIDEICGWREDLFTARKSAVNLLGVISMSKGPPMETATDSFSASTKRKKGQKNKRNNQRRSMGELLVLPFLSKFPIPSDSNVSQKKIPNDYFGVLMAYGGLQDFLREQESGYVTSLVRTRILPLYTVAVSLPYLVASANWVLGELGSCLPEEMSADVYSQLLMAVVMPDKQDISCYPVRVSAAGAITTLLDNDYMPPDFLPLLQVIVSNIGDDESESSILFQLLSSIMEAGDEKVAVHIPHIVPALVGSVSKWLTANLEPWPQVVERGIAALAVMGQTWEDSRPEESESNESREKWVAGQAAIGRAFAALLQQVWLTPLCTQDQQDQNSPTSSCIEELSTLLLSVMLCIDGNHVIQELKISELLSAWAEMIAEWHAWEESEDLSIFDVIKEIVKLDSRYRLKNFLVKEMPPPPAPPVPNRSVIEGIGTFVCEAIKQYPSATYRACSCVHMLLHCPTYSLETEGVKQSLAIAFSRAAFSRFIEVRSTPSSLWKPLLLAISSCYLCYPDIIEGILEKGEEGGITIWASALCHISSSSFEAAGLMAESEMKLIVMTLARLIEQLLKQGKSGGDSIQNCFTSLLEVLVQLKEVRDGKGDEEAAEEAENDDEDEDEDSDDSEDYDEDSEVEEYEETEEEFLNRYAKAAEALENGSIIEEGDDEDQEVEMELGQLLDIDEQKVVLSLIDKYNHVLIQGQGLPPQLIMNFLNAFPGYGLYFQQYR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	523554	531499	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006886 intracellular protein transport

molecular_function

GO:0005488 binding

GO:0008536 Ran GTPase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000605.1	PF03810.14	IBN_N	25	94	1.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.483
SRR1783600	control	11.485
SRR1783602	moderate drought stress	9.304
SRR1811619	moderate drought stress	9.227

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.107
DRR006520	Root Summer glycyrrhizin high producing strain	12.230
DRR006521	Root Winter glycyrrhizin high producing strain	6.567
DRR006522	Root Winter glycyrrhizin high producing strain	6.261
DRR006523	Root Summer glycyrrhizin low producing strain	20.407
DRR006524	Root Summer glycyrrhizin low producing strain	20.675
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.082
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.002

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.837
SRR2868004	Drought Stress (root)	17.706
SRR2967015	Control (root)	18.058

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.945
SRR9715740	Leaf	5.083
SRR9715741	Leaf	6.865
SRR9715739	Root	2.581
SRR9715742	Root	13.902
SRR9715743	Root	12.417

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.804
SRR8749028	MeJA induced 9h	19.744
SRR8749029	MeJA induced 9h	14.511
SRR8749030	Uninduced	3.522
SRR8749031	Uninduced	1.871
SRR8749032	Uninduced	2.110

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.135
SRR8400027	Control - Root	17.658