Gene detail information of Glyur000012s00000597 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17380.1 | 6.00E-63 | TRAF-like family protein |
| NR | XP_004508093.1 | 1.69E-111 | PREDICTED: uncharacterized protein LOC101513533 [Cicer arietinum] |
| Swissprot | tr|Q84WU2|UBP13_ARATH | 1.00E-16 | Ubiquitin carboxyl-terminal hydrolase 13 |
| trEMBL | tr|G7JQ23|G7JQ23_MEDTR | 2.00E-109 | BTB/POZ and MATH domain protein {ECO:0000313|EMBL:AES92052.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00012 | 466126 | 469443 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000012s00000597.1 | PF00917.21 | MATH | 25 | 153 | 6.20E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.312 |
| SRR1783600 | control | 2.435 |
| SRR1783602 | moderate drought stress | 1.875 |
| SRR1811619 | moderate drought stress | 1.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.250 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.225 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.524 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.565 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.337 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.503 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.246 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.774 |
| SRR2868004 | Drought Stress (root) | 7.196 |
| SRR2967015 | Control (root) | 6.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.534 |
| SRR9715740 | Leaf | 1.592 |
| SRR9715741 | Leaf | 2.109 |
| SRR9715739 | Root | 0.439 |
| SRR9715742 | Root | 1.763 |
| SRR9715743 | Root | 1.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.923 |
| SRR8749028 | MeJA induced 9h | 5.828 |
| SRR8749029 | MeJA induced 9h | 7.776 |
| SRR8749030 | Uninduced | 11.704 |
| SRR8749031 | Uninduced | 14.439 |
| SRR8749032 | Uninduced | 10.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.915 |
| SRR8400027 | Control - Root | 5.178 |