Gene detail information of Glyur000012s00000596 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15580.1 | 5.00E-49 | Ubiquitin-like superfamily protein |
| NR | XP_003609856.1 | 1.79E-72 | Autophagy-related protein [Medicago truncatula] |
| Swissprot | tr|Q9LRP7|ATG8I_ARATH | 5.00E-62 | Autophagy-related protein 8i |
| trEMBL | tr|G7JQ24|G7JQ24_MEDTR | 7.00E-73 | Autophagy-related protein {ECO:0000256|RuleBase:RU004384} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00012 | 465245 | 467449 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000012s00000596.1 | PF02991.11 | Atg8 | 15 | 118 | 2.10E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.449 |
| SRR1783600 | control | 12.762 |
| SRR1783602 | moderate drought stress | 6.568 |
| SRR1811619 | moderate drought stress | 6.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.063 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.713 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.817 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.290 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.420 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.640 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.070 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.845 |
| SRR2868004 | Drought Stress (root) | 21.914 |
| SRR2967015 | Control (root) | 17.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.517 |
| SRR9715740 | Leaf | 7.983 |
| SRR9715741 | Leaf | 10.187 |
| SRR9715739 | Root | 4.101 |
| SRR9715742 | Root | 4.215 |
| SRR9715743 | Root | 4.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.606 |
| SRR8749028 | MeJA induced 9h | 40.917 |
| SRR8749029 | MeJA induced 9h | 56.586 |
| SRR8749030 | Uninduced | 50.249 |
| SRR8749031 | Uninduced | 85.647 |
| SRR8749032 | Uninduced | 66.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.996 |
| SRR8400027 | Control - Root | 27.873 |