Gene detail

Gene detail information of Glyur000012s00000594

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02500.2	0	S-adenosylmethionine synthetase 1
NR	AIT39705.1	0	S-adenosylmethionine synthetase [Robinia pseudoacacia]
COG	YP_001179664.1	6.00E-161	S-adenosylmethionine synthetase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|Q8W3Y4\|METK_PHALU	0	S-adenosylmethionine synthase
trEMBL	tr\|A0A097GX09\|A0A097GX09_ROBPS	0	S-adenosylmethionine synthetase {ECO:0000313\|EMBL:AIT39705.1}

Sequence

Transcript Sequence

>Glyur000012s00000594.1
ATGGCAGAGACATTCCTTTTCACCTCCGAGTCAGTGAACGAGGGACACCCTGACAAGCTGTGTGACCAAATCTCCGATGCTGTTCTGGATGCATGCCTTGAACAGGACCCAGATAGCAAGGTAGCCTGTGAAACATGCACCAAGACCAACTTGGTGATGGTGTTTGGAGAGATCACAACCAAGGCCACAGTTGACTATGAGAAAATCGTGCGTGACACCTGCAGGAACATTGGGTTTGTCTCAGACGATGTGGGACTTGATGCTGACAACTGCAAGGTCCTTGTCAACATTGAGCAGCAGAGCCCTGATATTGCTCAGGGTGTCCATGGCCATCTAACAAAAAGACCTGAGGAAATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCCACTGATGAGACCCCTGAATTGATGCCCTTGAGCCATGTCCTTGCAACCAAGCTCGGTGCTCGCCTCACCGAGGTTCGCAAGAATGGAACATGCCCTTGGCTCAGACCTGATGGCAAGACCCAGGTCACTGTTGAGTATTACAATGACAAGGGTGCCATGGTCCCGGTTCGTGTCCACACCGTGCTCATCTCTACCCAGCATGATGAGACTGTCACCAATGATGAAATTGCTGCCGATCTTAAAGAGCATGTTATCAAGCCTGTGATTCCTGAGAAGTACCTTGACTCCAAGACCATTTTCCACTTGAACCCTTCTGGTCGTTTTGTCATTGGAGGACCTCACGGTGATGCCGGTCTCACCGGCCGCAAGATCATCATTGACACCTATGGTGGTTGGGGTGCACATGGTGGCGGTGCCTTCTCAGGGAAGGACCCAACCAAGGTNGACAGGAGTGGAGCTTACATTGTGAGACAGGCTGCTAAGAGCATTGTTGCAAGTGGACTTGCTAGGAGGTGCATTGTGCAAGTCTCCTATGCTATTGGTGTGCCTGAGCCTTTGTCTGTTTTTGTTGANACATATGGTACAGGGAAGATCCCTGATAAGGAGATCCTCACTATTGTGAAGAACAGCTTTGATTTCAGGCCTGGCATGATCTCTATCAACCTTGATCTCAAGAGGGGTGGCAACAACAGGTTCTTGAAGACTGCTGCTTATGGACATTTTGGCAGGGATGACACTGACTTCACATGGGAAGTGGTGAAGCCTCTCAAGTGGGAGAAGGCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	450534	451712	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00789	metK	EC:2.5.1.6	Biosynthesis of amino acids	map01230
			Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0006556 S-adenosylmethionine biosynthetic process

molecular_function

GO:0004478 methionine adenosyltransferase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000594.1	PF00438.15	S-AdoMet_synt_N	4	102	5.60E-42
Glyur000012s00000594.1	PF02772.11	S-AdoMet_synt_M	117	239	1.90E-49
Glyur000012s00000594.1	PF02773.11	S-AdoMet_synt_C	241	382	4.90E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	444.617
SRR1783600	control	473.416
SRR1783602	moderate drought stress	544.566
SRR1811619	moderate drought stress	540.845

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	316.078
DRR006520	Root Summer glycyrrhizin high producing strain	316.623
DRR006521	Root Winter glycyrrhizin high producing strain	177.414
DRR006522	Root Winter glycyrrhizin high producing strain	171.793
DRR006523	Root Summer glycyrrhizin low producing strain	257.871
DRR006524	Root Summer glycyrrhizin low producing strain	258.790
DRR006525	Leaf Summer glycyrrhizin high producing strain	246.572
DRR006526	Leaf Summer glycyrrhizin high producing strain	244.886

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	817.537
SRR2868004	Drought Stress (root)	1025.701
SRR2967015	Control (root)	796.519

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	753.673
SRR9715740	Leaf	640.244
SRR9715741	Leaf	766.675
SRR9715739	Root	1117.537
SRR9715742	Root	840.432
SRR9715743	Root	861.887

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	233.548
SRR8749028	MeJA induced 9h	358.207
SRR8749029	MeJA induced 9h	105.716
SRR8749030	Uninduced	1214.174
SRR8749031	Uninduced	142.970
SRR8749032	Uninduced	235.302

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	797.862
SRR8400027	Control - Root	715.118