Gene detail

Gene detail information of Glyur000012s00000593

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53480.1	0	pleiotropic drug resistance 9
NR	XP_004508091.1	0	PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Cicer arietinum]
COG	YP_008149444.1	4.00E-36	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q5W274\|PDR3_TOBAC	0	Pleiotropic drug resistance protein 3
trEMBL	tr\|I1KMK2\|I1KMK2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G36160.1}

Sequence

Transcript Sequence

>Glyur000012s00000593.1
CTTCAGGTTTCTGGAGAAATCTCTTACAATGGTCACAAGCTAGATGAATTTGTTCCTCAAAAAACATCAGCTTACATAAGCCAGTATGACCTGCACATTCCTGAGATGACAGTGAGAGAAACAATTGACTTCTCGGCACGCTGTCAGGGGGTCGGGAGCAGAGCTGATGTAGTGGCTGAAATCACCAGGAAAGAAATAGAACAAGGAATCATCCCTGACCCAGATATTGATACCTATATGAAGGCAATTTCAGTCGAAGGACAAAGCGAAAATCTTCAAACAGAATATGTTTTAAAGATACTCGGACTGGATATCTGTGCTGACATACTAGTCGGAGATGCACTAGATAGAGGCATTTCAGGTGGACAGAAGAAAAGGCTAACTACAGGAGAGATGATTGTAGGTCCCATAAAAGCACTTTTTATGGATGAAATATCAACTGGCTTAGACAGCTCCACAACCTTTCAAATAGTTACATGTCTCCAGCAGTTGGTGCACATCACAGATGCAACAGCAGTGCTTTCACTCCTTCAACCAGCACCAGAAACCTTCGAGTTATTTGATGATCTTATATTGATGGCAGAGGGGAAGATAGTATACCATGGCCCCTGCAGTCAAGCACTCCAGTTTTTCAAGGATTGTGGTTTCTGGTGCCCAGAAAGAAAAGGGGTGGCAGACTTTCTCCAAGAGGTAATCTCTAAGAAGGATCAAAGGCAATACTGGTACCGCACAGATGTTCCTTACAGTTATGTTTCAGTGGATGAGTTCTCTCAAATCTTCAAAACAAGTTACTGGGGACGAATGTTAGACGATGAGCTCTCACAACCATATGATAAATCTCAATCCCATATAAATTCTGTATCATTTAGCAAATACTCCTTGGGAAAATGGGAACTGTTTAAAGCCTGTATGAAGAGGGAGATTCTTCTCATGAAGCGAAACTCATTTATCTATGTATTCAAAACTGTGCAGCTTACACTCACTGCAATCATAACAATGACNGTCTTCTTACGTACTCAGCTGGCCGTGGACTTGATAGGAGCTAACTATTTATTGGGTTCATTGTACTATACGCTTGTTCGCCTCATGACTAATGGAGTTGCTGAGTTGATCATGACTATTACTAGACTCCCTGTTGTTTATAAGCAGAAAGCATTCTATCTCTATCCAGCTTGGGCTTATTGTCTTCCAGCTTCCATTCTAAAGATTCCATTTTCAGTTCTTGATTCTCTTGTTTGGACATCATTAACATATTATGTTATAGGCTACAGCCCAGAAATAACAAGGTTCCTCCGCCAGTTTCTTTTGCTTATCACTCTGCATATGTCATCCACCTCCATGTGTCGATTCCTTGCCTCAGTTTTCAAAACTGATGTTGCAGCTACAACTGTTGGTTCCCTGGTCTTAGTACTGATGTTCTTGTTTGGAGGCTTTATTCTTCCTCGACCATCATTACCAAAGTGGTTGAGGTGGGGTTTTTGGCTTTCTCCTATGACATATGGGGAAATAGGAATAACACTAAATGAATTTCTTGCTCCTCGCTGGCAGAAGATCGAGGGAAACATCACCATGGGAAGGGAGGTTCTTCGTAGTCGTGGTTTAGACTTTGATAGCAACTTCTTCTGGATATCAGTTGGAGCCCTACTTGGTTTCACAGTANTATTTGATTTTGGATTTATCTTAGCATTAACTTACTTAAAAGAGCCTAAGCCATCTCGAGCTTTAGTCTCAAAAAAGAGGCTCTCTCAACTAAAGGGAGAAGAAAAAAGCAACAGTGTGGAACTAAAGTCAGTTACAGTTGATATTAGCCACACACCACGGGAAACTCAAAGCACAGGGAAAATGGTCCTGCCCTTTGAGCCACTGACAATAGCATTTAAGGATGTGCAGTATTTTGTTGACACTCCTCCGGAGATGAAAAGGCACGGTTCCAATGAGAAAAAACTACAATTGCTCCGTGATATCACGGGAGCCTTTAGGCCAGGAATTCTTACTGCACTGATGGGAGTCAGTGGAGCAGGGAAGACAACTCTCATGGATGTCCTTTCAGGAAGAAAAACTGGAGGTGTCATTGAAGGAGATATAAGAATTGGAGGGTACCCCAAAGTGCAGAAGACATTTGCAAGAGTTTCAGGCTACTGTGAGCAGAATGACATACATTCTCCATATATAACAGTTGAAGAATCTGTCAGATACTCAGCTTGGTTGCGGTTGCCGAGGGAGATTGATTCAGCCACAAAAGGGCAGAAATTTGTTGAAGAAGTCCTTGAAACAATTGAACTTGATGATATAAAGGATTCTTTAGTTGGCATCCCTGGCCAAAGTGGCTTATCTACAGAGCAACGTAAAAGACTAACCATTGCGGTGGAGCTTGTTTCCAATCCATCGATAATATTTATGGATGAACCTACATCAGGTTTGGATGCCCGGGCAGCTGCAGTTGTTATGCGTGCAGTGAAGAATGTTGTTGCCACTGGTAGGACCATTGTTTGCACCATACATCAACCAAGCATCGACATATTTGAGACTTTTGATGAGTTGATTCTAATGAAATCTGGAGGACAGATTATTTATAATGGAATGCTAGGCCATCATTCAAGTAGACTGATTGAATATTTTCAGAGTATACCCGGAGTTCCAAAGATCAAGGATAATTATAATCCTGCAACCTGGATGTTGGAAGCTACCTCTGCATCTGTAGAACATGAACTTCAAATAGATTTTGCAAAAATCTATAAAGAGTCACACCTTAACCGGGATACCCTTGAATTGGTGAGACAGTTAAGTGAACCACTGCCGGGTTCAAAAGACTTGCACTTTTCAACTCGCTTCCCACAAAATCTCGTGGGGCAGTTCACGGCATGCCTATGGAAGCAACACTTGTCCTATTGGAGAAGTCCTGAGTACAACTTAACACGATTCGTGTTCATGGTTGTTGCAGCAATAATATTTGGGGCAGTATTTTGGCAGAAAGGGAAGGAAATAAACAATCAGCAGGACTTGTTCAATGTGTTTGGATCNATGTATATTGCTGTAATATTCTTGGGAATAAATTACTGTTCAACAATTCTACCATACGTGGCAACTGAGCGCAGCGTCTTGTATCGAGAAAAATTTGCTGGAATGTATTCTTCCATGGCGTATTCATTTGCACAGGTGGCCATTGAAATACCATATATCTTAGTGCAAGCAATTTTGTATGTGGCCATCACATATCCAATGATAGGTTTCGAANGGTCAGTTCAGAAAATCTTTTGGTACTTCTACACCACATTCTGCACATTTTTGTACTTTGTATATCTTGGAATGCTGATAATGGCAATGAGCTCAAATCTGGATATAGCTTCCGTATTGTCAACTGCAGTCTACACCATATTCAACCTCTTTTCTGGATTCCTCATGCCAGGACCTAAAATTCCTAAATGGTGGGTTTGGTGCTACTGGATTTGCCCTACAGCTTGGTCCTTGAATGGCCTCTTAACTTCACAATATGGAGACATGGACAAGGAAATACTCATATTTGGGGTGAAAAAATCAGTTGGTACCTTTCTAAAGGATTACTATGGGTTCAGGCATGACAGGTTAAGCCTTGGAAAATGA

Protein Sequence

>Glyur000012s00000593.1
MTVRETIDFSARCQGVGSRADVVAEITRKEIEQGIIPDPDIDTYMKAISVEGQSENLQTEYVLKILGLDICADILVGDALDRGISGGQKKRLTTGEMIVGPIKALFMDEISTGLDSSTTFQIVTCLQQLVHITDATAVLSLLQPAPETFELFDDLILMAEGKIVYHGPCSQALQFFKDCGFWCPERKGVADFLQEVISKKDQRQYWYRTDVPYSYVSVDEFSQIFKTSYWGRMLDDELSQPYDKSQSHINSVSFSKYSLGKWELFKACMKREILLMKRNSFIYVFKTVQLTLTAIITMTVFLRTQLAVDLIGANYLLGSLYYTLVRLMTNGVAELIMTITRLPVVYKQKAFYLYPAWAYCLPASILKIPFSVLDSLVWTSLTYYVIGYSPEITRFLRQFLLLITLHMSSTSMCRFLASVFKTDVAATTVGSLVLVLMFLFGGFILPRPSLPKWLRWGFWLSPMTYGEIGITLNEFLAPRWQKIEGNITMGREVLRSRGLDFDSNFFWISVGALLGFTVXFDFGFILALTYLKEPKPSRALVSKKRLSQLKGEEKSNSVELKSVTVDISHTPRETQSTGKMVLPFEPLTIAFKDVQYFVDTPPEMKRHGSNEKKLQLLRDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGVIEGDIRIGGYPKVQKTFARVSGYCEQNDIHSPYITVEESVRYSAWLRLPREIDSATKGQKFVEEVLETIELDDIKDSLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVATGRTIVCTIHQPSIDIFETFDELILMKSGGQIIYNGMLGHHSSRLIEYFQSIPGVPKIKDNYNPATWMLEATSASVEHELQIDFAKIYKESHLNRDTLELVRQLSEPLPGSKDLHFSTRFPQNLVGQFTACLWKQHLSYWRSPEYNLTRFVFMVVAAIIFGAVFWQKGKEINNQQDLFNVFGSMYIAVIFLGINYCSTILPYVATERSVLYREKFAGMYSSMAYSFAQVAIEIPYILVQAILYVAITYPMIGFEXSVQKIFWYFYTTFCTFLYFVYLGMLIMAMSSNLDIASVLSTAVYTIFNLFSGFLMPGPKIPKWWVWCYWICPTAWSLNGLLTSQYGDMDKEILIFGVKKSVGTFLKDYYGFRHDRLSLGK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	429198	435483	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000593.1	PF01061.19	ABC2_membrane	264	475	1.10E-37
Glyur000012s00000593.1	PF08370.6	PDR_assoc	485	542	1.50E-19
Glyur000012s00000593.1	PF00005.22	ABC_tran	617	770	2.50E-19
Glyur000012s00000593.1	PF01061.19	ABC2_membrane	916	1129	8.50E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.848
SRR1783600	control	12.796
SRR1783602	moderate drought stress	14.908
SRR1811619	moderate drought stress	14.941

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.042
DRR006520	Root Summer glycyrrhizin high producing strain	9.994
DRR006521	Root Winter glycyrrhizin high producing strain	24.640
DRR006522	Root Winter glycyrrhizin high producing strain	23.899
DRR006523	Root Summer glycyrrhizin low producing strain	10.762
DRR006524	Root Summer glycyrrhizin low producing strain	10.741
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.624
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.466

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.312
SRR2868004	Drought Stress (root)	74.286
SRR2967015	Control (root)	59.912

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.080
SRR9715740	Leaf	5.356
SRR9715741	Leaf	15.709
SRR9715739	Root	5.112
SRR9715742	Root	33.987
SRR9715743	Root	28.733

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.573
SRR8749028	MeJA induced 9h	22.880
SRR8749029	MeJA induced 9h	6.406
SRR8749030	Uninduced	36.231
SRR8749031	Uninduced	47.595
SRR8749032	Uninduced	20.917

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.388
SRR8400027	Control - Root	27.454