Gene detail information of Glyur000012s00000575 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06483.1 | 5.00E-170 | pyruvate dehydrogenase kinase |
| NR | XP_003546545.1 | 0 | PREDICTED: [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial [Glycine max] |
| Swissprot | tr|Q9SBJ1|PDK_ARATH | 0 | [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial |
| trEMBL | tr|Q6PP98|Q6PP98_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G21410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00012 | 357823 | 362005 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000012s00000575.1 | PF10436.4 | BCDHK_Adom3 | 51 | 208 | 2.10E-59 |
| Glyur000012s00000575.1 | PF02518.21 | HATPase_c | 250 | 377 | 1.90E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.835 |
| SRR1783600 | control | 5.678 |
| SRR1783602 | moderate drought stress | 5.427 |
| SRR1811619 | moderate drought stress | 5.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.724 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.837 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.662 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.664 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.836 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.007 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.203 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.398 |
| SRR2868004 | Drought Stress (root) | 6.273 |
| SRR2967015 | Control (root) | 6.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.252 |
| SRR9715740 | Leaf | 10.709 |
| SRR9715741 | Leaf | 8.118 |
| SRR9715739 | Root | 2.633 |
| SRR9715742 | Root | 4.533 |
| SRR9715743 | Root | 4.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.675 |
| SRR8749028 | MeJA induced 9h | 1.147 |
| SRR8749029 | MeJA induced 9h | 1.467 |
| SRR8749030 | Uninduced | 0.823 |
| SRR8749031 | Uninduced | 0.561 |
| SRR8749032 | Uninduced | 1.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.469 |
| SRR8400027 | Control - Root | 8.212 |