Gene detail information of Glyur000012s00000574 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06540.1 | 2.00E-77 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | KHN44997.1 | 2.20E-149 | Pentatricopeptide repeat-containing protein [Glycine soja] |
| Swissprot | tr|Q9FG16|PP367_ARATH | 2.00E-91 | Pentatricopeptide repeat-containing protein At5g06540 |
| trEMBL | tr|I1LYG2|I1LYG2_SOYBN | 8.00E-149 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G18010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00012 | 355338 | 356078 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000012s00000574.1 | PF01535.15 | PPR | 13 | 38 | 0.00088 |
| Glyur000012s00000574.1 | PF14432.1 | DYW_deaminase | 145 | 235 | 1.90E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.586 |
| SRR1783600 | control | 0.593 |
| SRR1783602 | moderate drought stress | 0.871 |
| SRR1811619 | moderate drought stress | 0.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.185 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.098 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.154 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.733 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.360 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.193 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.299 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.249 |
| SRR2868004 | Drought Stress (root) | 1.077 |
| SRR2967015 | Control (root) | 1.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.896 |
| SRR9715740 | Leaf | 1.355 |
| SRR9715741 | Leaf | 1.158 |
| SRR9715739 | Root | 1.082 |
| SRR9715742 | Root | 1.658 |
| SRR9715743 | Root | 0.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.318 |
| SRR8749028 | MeJA induced 9h | 3.834 |
| SRR8749029 | MeJA induced 9h | 4.148 |
| SRR8749030 | Uninduced | 1.291 |
| SRR8749031 | Uninduced | 1.027 |
| SRR8749032 | Uninduced | 0.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.654 |
| SRR8400027 | Control - Root | 1.370 |