Gene detail

Gene detail information of Glyur000012s00000570.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17510.1	5.00E-158	CBL-interacting protein kinase 1
NR	XP_003609876.1	0	CBL-interacting protein kinase [Medicago truncatula]
COG	YP_004266623.1	2.00E-32	serine/threonine protein kinase with PASTA sensor(s) [Syntrophobotulus glycolicus DSM 8271]
Swissprot	tr\|Q8RWC9\|CIPK1_ARATH	0	CBL-interacting serine/threonine-protein kinase 1
trEMBL	tr\|G7JR06\|G7JR06_MEDTR	0	CBL-interacting kinase {ECO:0000313\|EMBL:AES92073.1}

Sequence

Transcript Sequence

>Glyur000012s00000570.1
GGGGGTTCCATCTTCCATGTCTTTCTATTAGTTCTGTTGTGATGCCAAATAGCTTCTTTCAAGTCTCCATTCGTTTCTTTTCCGTAATAGGGAAATCTCTCTCCTCTCTCTCTCTCACACACACACACACACTGTTGCTTTTTGATTTCTTAACCGATAGCGTATCATGCGTTTTATGCATTGAAAAGGGACAAGTGGGAGCAGTTTGGGGGGAATTAGAGGGTGTTGTGTGTTGTGTTGATCCCTTCCATCAATTTTGCCAAAGCATAGAGAAGAAGGAGTGAGTGAGAGAGGGAGAAATACAACAAAAAAAATGGTGATACTGAGTCTTGGGAGAAGAAGAGTAGTGAGAGGCAAAAGCAGAGGGAGGGAATGAGTAGGCTTGGTGGTAGCAAATATGAGTTGGGGAGGACTCTTGGTGAAGGCAATTTTGGGAAAGTGAAGTTCGCTAGGGACACAGATTCTGGCCAACCTTTTGCCATAAAGATCATTGACAAGAACAAGATCATCCATCTCAATATCACCTACCAGATAAAGAGGGAAATAGCGGCCTTGAAGCTCCTGAGGCATCCCAATGTTGTTAAACTATACGAGGTCTTGGCTAGCAAAACAAAAATTTACATGGTACTTGAGTACGTTACTGGAGAGGAGTTATTTGACAAAATTGCATCCAAGGGTAAACTTACCGAAGGTGAAGGNAGAAAGCTGTTCCAACAGTTGATTGATGGTGTGAGCTACTGCCACAGTAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTACTTGTGGATGCCAAAGGGAATATAAAGATAACCGATTTTGGCCTTAGTGCCTTACCCCAGCAATTTGGGGCAGATGGGTTGCTGCACACAACTTGTGGAAGTCCCAATTATGTTGCACCAGAGATTGTTGCTAATAGGGGCTATAATGGTGCAACATCAGATGTATGGTCATGTGGTGTTATCTTGTATGTGATGCTAACAGGATACCTACCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAAAAGAGGATCCTTGATCCAAACACCAAAACCCGGATAACAATGGCTGGGATCAAAGAAGATCCATGGTTCAAGCTGGGATATACTCCAGCAGAACCTGAGGATGAGGAAGANGATGTATATATTGATGATGAAGCCTTCTCCATCCATGAATCGTCACTTGGTGTAGAACAGAGGAGTTCAGGATCACCAACCCGTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCCTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTCTCTGAGAGGAAGATAAGGTTTACATCAAATCTTTCAGCCAAAGATCTGATGGAGGGGATTGAGGGCACTGTGACACAAATGGAATTTAGAGTCCAGAAGAAAAATGGCAAATTGAAAGTGATGCAAGAGAACAAGGAGCATAAAACTCTAGGCAGCCTCTCAGTGACAATAGAGGTTTTCGAAATAAGCCCATCATTGTATGTAGTAGAATTAAGGAAGTCTTATGGAGATACCTCTGTATATAGACAGTTATGCAAGAAGTTATTGAATGATCTGGGNGCTCCCCAAGGCAAACGGGTGAACTCAGAAGTGAAATTAGAAGCCAGATGAGCATAAGTTATCTTTTGCTCAGGTCGAATAGCCACACATATAGATGATTCAAAAATCAATTGTAAATTGCATTATGATTAAAGAGTAAGTGAAATTTGTGTATGTTAGATAGTAATAGAGCAACTTTTGAATTTAGCAATCAATTAAATAGTCGAACCCCGAACGATGGCATCTCTATGTAAAAGTAAGTTCCAATGAGCCTGAAATTGGGTATCTTGTCTTGTATCAGCTTCAGTAAGTGTTCTTGTTTTCCGGGGCTTTTGTTTATCATGGAAAGTTCACCTCTGAACAAAACCTTCGCAGAGGTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	344518	350679	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K07198	PRKAA, AMPK	EC:2.7.11.11	FoxO signaling pathway	map04068
			PI3K-Akt signaling pathway	map04151
			AMPK signaling pathway	map04152
			mTOR signaling pathway	map04150
			Autophagy - animal	map04140
			Tight junction	map04530
			Insulin signaling pathway	map04910
			Glucagon signaling pathway	map04922
			Adipocytokine signaling pathway	map04920
			Oxytocin signaling pathway	map04921
			Longevity regulating pathway - mammal	map04211
			Longevity regulating pathway - multiple species	map04213
			Circadian rhythm	map04710
			Fluid shear stress and atherosclerosis	map05418
			Hypertrophic cardiomyopathy (HCM)	map05410
			Non-alcoholic fatty liver disease (NAFLD)	map04932
			Insulin resistance	map04931

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000570.1	PF00069.20	Pkinase	9	213	1.90E-64
Glyur000012s00000570.1	PF03822.9	NAF	282	342	8.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.279
SRR1783600	control	3.289
SRR1783602	moderate drought stress	3.201
SRR1811619	moderate drought stress	3.439

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.859
DRR006520	Root Summer glycyrrhizin high producing strain	5.654
DRR006521	Root Winter glycyrrhizin high producing strain	0.285
DRR006522	Root Winter glycyrrhizin high producing strain	0.225
DRR006523	Root Summer glycyrrhizin low producing strain	2.338
DRR006524	Root Summer glycyrrhizin low producing strain	2.315
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.391
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.977

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.966
SRR2868004	Drought Stress (root)	39.138
SRR2967015	Control (root)	22.996

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.577
SRR9715740	Leaf	21.992
SRR9715741	Leaf	13.978
SRR9715739	Root	2.027
SRR9715742	Root	4.035
SRR9715743	Root	4.111

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.947
SRR8749028	MeJA induced 9h	16.183
SRR8749029	MeJA induced 9h	7.229
SRR8749030	Uninduced	10.654
SRR8749031	Uninduced	6.008
SRR8749032	Uninduced	8.256

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.968
SRR8400027	Control - Root	12.280