Gene detail information of Glyur000012s00000564 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48960.1 | 0 | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase |
| NR | XP_003609880.1 | 0 | Cytosolic purine 5'-nucleotidase [Medicago truncatula] |
| COG | YP_002492482.1 | 2.00E-57 | HAD superfamily hydrolase [Anaeromyxobacter dehalogenans 2CP-1] |
| trEMBL | tr|G7JR10|G7JR10_MEDTR | 0 | Cytosolic purine 5-nucleotidase {ECO:0000313|EMBL:AES92077.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00012 | 314795 | 321775 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000012s00000564.1 | PF05761.9 | 5_nucleotid | 178 | 415 | 2.60E-87 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.306 |
| SRR1783600 | control | 13.296 |
| SRR1783602 | moderate drought stress | 24.258 |
| SRR1811619 | moderate drought stress | 24.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.404 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.697 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.391 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.530 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.018 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.207 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.040 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 35.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.270 |
| SRR2868004 | Drought Stress (root) | 19.178 |
| SRR2967015 | Control (root) | 21.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.234 |
| SRR9715740 | Leaf | 43.093 |
| SRR9715741 | Leaf | 43.520 |
| SRR9715739 | Root | 6.355 |
| SRR9715742 | Root | 15.187 |
| SRR9715743 | Root | 12.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.418 |
| SRR8749028 | MeJA induced 9h | 6.282 |
| SRR8749029 | MeJA induced 9h | 3.466 |
| SRR8749030 | Uninduced | 1.503 |
| SRR8749031 | Uninduced | 0.301 |
| SRR8749032 | Uninduced | 1.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.559 |
| SRR8400027 | Control - Root | 25.634 |