Gene detail information of Glyur000012s00000556 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17460.1 | 1.00E-11 | PHD finger family protein |
| NR | AES92089.2 | 1.80E-66 | DNA-binding protein [Medicago truncatula] |
| trEMBL | tr|G7JR22|G7JR22_MEDTR | 7.00E-67 | DNA-binding protein {ECO:0000313|EMBL:AES92089.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00012 | 249255 | 249869 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.572 |
| SRR1783600 | control | 13.714 |
| SRR1783602 | moderate drought stress | 16.646 |
| SRR1811619 | moderate drought stress | 16.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.124 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.184 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.403 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.365 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.588 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.595 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.852 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.848 |
| SRR2868004 | Drought Stress (root) | 8.443 |
| SRR2967015 | Control (root) | 13.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.117 |
| SRR9715740 | Leaf | 6.932 |
| SRR9715741 | Leaf | 7.435 |
| SRR9715739 | Root | 26.184 |
| SRR9715742 | Root | 10.038 |
| SRR9715743 | Root | 13.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.800 |
| SRR8749028 | MeJA induced 9h | 16.593 |
| SRR8749029 | MeJA induced 9h | 18.600 |
| SRR8749030 | Uninduced | 3.651 |
| SRR8749031 | Uninduced | 5.433 |
| SRR8749032 | Uninduced | 7.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.028 |
| SRR8400027 | Control - Root | 9.441 |