Gene detail

Gene detail information of Glyur000012s00000550

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G28050.1	3.00E-77	Cytidine/deoxycytidylate deaminase family protein
NR	AFK37233.1	6.67E-129	unknown [Lotus japonicus]
COG	YP_006420530.1	5.00E-42	cytosine/adenosine deaminase [Terriglobus roseus DSM 18391]
Swissprot	tr\|Q9S7I0\|TADA_ARATH	5.00E-18	tRNA(adenine(34)) deaminase, chloroplastic (Precursor)
trEMBL	tr\|I3SAE1\|I3SAE1_LOTJA	2.00E-129	Uncharacterized protein {ECO:0000313\|EMBL:AFK37233.1}

Sequence

Transcript Sequence

>Glyur000012s00000550.1
CATAATATGGGGTGAGTCAAAATCAAGGAATAAGGAAGCTTCGTTTTCCCCCTCCACCCATCGTTTCATTTAATTAATTCATTCATCTCCTTCTGACCCACCACGATCACCCTTTTTTCTTCATATTATTATATTATATTGTCGCCAACATCATCACGTCNTTTATTTTAATCACATTTGCATCCAAACTCACATCACATGCCTCTTATTATTTACTAGTATTTATTTATTTAATTAACGTACCGAACATATTCTGCCTTTTTATTTTTCGTGGACTCTATTCTCCTTCACCATTTCCNATTGCTTTTGTTCATCCTCCGTCCTTGTGCAACCCAACAAGCCTCCCGATTTCGTCGTTTCTCCCACAAAGTGCTTTCTTAATTACATCGAACGCTGTGATGGAGGAAGTTAACGTGGTAGAAACCAAGGATGGAACTGTTTCAGTAGCTTCTGCTTTTGCTGGTCACCAGGAAGCTGTGCAGGATAGAGACCACAAATTTTTGAGGAAAGCAGTTGAAGAAGCATATAAAGGGGTAGATTGTGGACATGGAGGCCCTTTTGGTGCTGTCATTGTTCGTAACGATGAAGTACTTGTTAGTTGTCACAACATGGTTCTAAATAACACNGACCCAACTGCTCATGCAGAGGTGACNGCAATAAGAGAGGCTTGTAAGAAGCTTAAGCAGATAGAACTTTCAGATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAATTAAGAGGTTGGTTTATGGAGCAAAGGCCGAGGCAGCAATTGCTATTGGGTTTGATGATTTCATTGCAGATGCATTGCGAGGTACCGGATTCTATCAGAAAGCACAGTTGGAGATTAAAAGAGCTGATGGGAATGAGGCCATCATTGCTGAAGAGGTTTTTCAGAAAACAAAGGAAAAATTCCAAATGTATTAGATCTCAATTCTTTTTTTATCCACACCCGATGAAAAAATTGGCCATAAAGGATTGGCTTCATTTGAATTATTGAAATTGTTGATAATGGATTGAGCTCATTTGAGTATAACATGTTATATCCTACAATTCGGGTTACATCAGATAATGACTATTTGATTGTCAATCAGTTTCTAATTTACATTTTCACAGGGGAGGATATCAAATGCATTTCCTTCTCAATTTATCATGTCATTGCTTGCTACTGATGTTTACATGAAAACTTTTTTTCTTTTTCTTCCTGAAGTTACATTTTCATGATGATGTGCAAGCATGCCTTAGCAGCATAGCTCTAGGGGTTTCTCGTCATTTGCTCCAATGTTTTTTTTTTTCTTTTGCCGAACTCTTAACTGTCTCTATCCTTTCGTTCATTGTTTTTTAAACAGTTTAAGCAGATATAATCTAGATAGAGAGTCACTAGTTTAGGTGTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	225791	229765	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0008270 zinc ion binding

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000550.1	PF00383.17	dCMP_cyt_deam_1	30	129	3.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.006
SRR1783600	control	11.118
SRR1783602	moderate drought stress	5.794
SRR1811619	moderate drought stress	5.670

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.945
DRR006520	Root Summer glycyrrhizin high producing strain	17.505
DRR006521	Root Winter glycyrrhizin high producing strain	6.462
DRR006522	Root Winter glycyrrhizin high producing strain	6.221
DRR006523	Root Summer glycyrrhizin low producing strain	5.052
DRR006524	Root Summer glycyrrhizin low producing strain	5.299
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.294
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.176

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.434
SRR2868004	Drought Stress (root)	63.835
SRR2967015	Control (root)	40.043

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.993
SRR9715740	Leaf	43.732
SRR9715741	Leaf	58.912
SRR9715739	Root	10.897
SRR9715742	Root	14.287
SRR9715743	Root	12.247

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	52.026
SRR8749028	MeJA induced 9h	56.101
SRR8749029	MeJA induced 9h	75.213
SRR8749030	Uninduced	58.931
SRR8749031	Uninduced	60.572
SRR8749032	Uninduced	77.605

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.996
SRR8400027	Control - Root	39.411