Gene detail information of Glyur000012s00000544.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G26670.1 | 3.00E-129 | Pectinacetylesterase family protein |
| NR | XP_004508066.1 | 0 | PREDICTED: protein notum homolog [Cicer arietinum] |
| trEMBL | tr|G7JR41|G7JR41_MEDTR | 0 | Pectinacetylesterase family protein {ECO:0000313|EMBL:AES92108.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00012 | 181821 | 187509 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE13 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000012s00000544.1 | PF03283.8 | PAE | 52 | 335 | 1.90E-127 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 73.563 |
| SRR1783600 | control | 73.529 |
| SRR1783602 | moderate drought stress | 38.253 |
| SRR1811619 | moderate drought stress | 37.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.647 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.166 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.765 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.402 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.893 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.196 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 43.526 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 43.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.497 |
| SRR2868004 | Drought Stress (root) | 16.008 |
| SRR2967015 | Control (root) | 15.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.934 |
| SRR9715740 | Leaf | 32.978 |
| SRR9715741 | Leaf | 33.177 |
| SRR9715739 | Root | 7.060 |
| SRR9715742 | Root | 8.108 |
| SRR9715743 | Root | 8.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.814 |
| SRR8749028 | MeJA induced 9h | 4.753 |
| SRR8749029 | MeJA induced 9h | 13.442 |
| SRR8749030 | Uninduced | 0.915 |
| SRR8749031 | Uninduced | 0.349 |
| SRR8749032 | Uninduced | 3.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 61.705 |
| SRR8400027 | Control - Root | 90.829 |