Gene detail

Gene detail information of Glyur000012s00000538

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62290.2	1.00E-122	Saposin-like aspartyl protease family protein
NR	XP_004508063.1	0	PREDICTED: aspartic proteinase oryzasin-1-like [Cicer arietinum]
COG	YP_003291571.1	8.00E-06	rhomboid family protein [Rhodothermus marinus DSM 4252]
Swissprot	tr\|P42211\|ASPRX_ORYSJ	3.00E-148	Aspartic proteinase (Precursor)
trEMBL	tr\|A0A072V2S8\|A0A072V2S8_MEDTR	0	Fungal proteinase A, aspartic proteinase superfamily protein {ECO:0000313\|EMBL:KEH32400.1}

Sequence

Transcript Sequence

>Glyur000012s00000538.1
TATACATACATAATAGCTAGAAGTGTTTTCACAAGCAGGAGATAAAACATTAAACAAGTACTGGTTACGTAAAGTTCTGGGTTTTGACAAGGTGCGTGAGTGGGAGAGAATTCCAGAATACAGTCTACTTCGATTGAAGGGTCTCTGTTCTTGTATTGTATTCCGAAGCTACTTCGTTTATCGTACGGGCAAATTGCATTATCCTACGCGAAACTACGCAGTGGTTTCCATGCAAGTGTAAATTGTTACTTANCAGCACCACCAAAAGTGAAAAAAAAGGGGAAAACAAGAAGGGAGCAATTGTTAGGTGGCAAGGAAGTGGAAGTGGAACCGTATCATGGATGGCTACATTTATATATGAAAGACATGTTAATTGTTACATACAACTCCGTGTTGTATGCAGTTCTGTGTCTGCACCCACGTAACTCTGTCTCAATAGCCCTGCTTCAAGAATCATCGTTATCAGATGACTTGAAAATATGGGTTTCAAGTGTTTGCTGACTGTTATATTCCTGTGGGCTTGGTTGGGATCCTTGGATTTTGCAACTTCTGATGATGGGTTAATGAGAATTAGTCTAAAAAGGAGGACTTTAGACATTAACAGTCTTAATTCTGCAAGGATCAAGGAGGGAGGATTAGGGGGTGCTGTCAATAAGAATAATTTAAAAGCAGATGTAGTGTATCTAAAGAATTACCTTGATGCACAATATTTTGGTGAAATCGGTATTGGGTCACCTCCACAAAACTTCAAAGTGGTGTTTGACACCGGAAGCTCAAACCTTTGGGTCCCGTCTTCCAAATGCATCTTGTCTATTGCTTGCTATATTCATTCCAAGTATAGGTCGAAACTGTCTAGCACCTATAAGAAAATAGGTAATTATGGTGTGGGATGGAAGTATGAAAGAACACCTTGCAAAATCCCTTTTGGCCGTAGAAACATTTCTGGCTTCTTCAGCCAGGATAATGTAAAAGTTGGGAATGTCATTGTCAGAGATCAGGAATTTGCTGAGATTACAAAGGAAAGGTCTTTGGAATTTTTAGCACTACATTTTGATGGGATACTTGGACTTGGATTCCAGGATATTTCAGTTGGACAAGTCACACCAGTGTGGTATAATATGATGCAACAAGGGCACATGGCTCAAAAAATTTTCTCTCTTTGGCTAAACCAAGACCCAATGGCAAGGGTAGGGGGTGAGATTGTCTTTGGTGGTATTGACTGGAAGCACTTTAGGGGTGACCATACTTACGTTCCAGTTTCCCGAAAGGGCTATTGGCAGATTGAGGTGGAAGATATTCTACTTGCAAACAATTCAACAGGGCTATGTGAGGGTGGCTGTGCTGCCATTATTGACTCAGGGACATCTTTAATTGCCGGTCCAACAAGTGTTGTGGCTCAAATTAACCATGCCATTGGAGCAGAAGGATATTTAAAACCTGAAATTATATGCGTTGAAGTTGGACTCTGCTCGCGTAATGGATCACATGTAGTGAAGGAGAACCCCTTGTGCACTTTCTGCGATATGATTGTCTTTTCGATTCAAGTTCAGCTTAGGCAGAGGAATACAAAGGACAAAATATTAAAATATGTGGATGAGTATGTCCTGAGAGTTGAAGAAGGCTGCTCTACTGTCTGCTATGGCGGTTTTGTTGCTATAGATGTGCCTCCTCCACAGGGTCCTCTCTGGGTTCTTGGCGATCTATTTTTGGGGGCATACCATACGGTTTTTGACTACGGCAATCTCCGCATAGGATTTGCTGAAGCTGCATACCCTGGCTTGGAGGAAAAGGAAAAGAGAAGAAGAGGAGCGCGGAGCAGAGAGTGGGAGAAAGGTCCGGAATCTTCCAAGCGCAACGCCCACACCACACTGATATCATATACGTTTCTTGGTGAGCAAGGCGTGCGTGCGTCGATGGAGGTGAGAATTGGGAGAAGGGTTTCTCGGGGAATGCTGCCACTGCTGGCACTCCACACGTTCAGCGAGTATTACAGATCGGAGAGGAAACCCCCCGTCACCGCCGCCCTCATCGCCGCCAACACCCTCATCTATCTCCGTCCTTCCCTCCTCGACGCCCTCATCCCCTCCATCGACGAGGTCTGGTTCAACCCCCACCTCATCCTCAAGCACAAGGACCTTAAGCGGTTTTTTCTGTCGGCGTTCTACCACATCGGAGAACCTCACCTCGTCTACAACATGCTATCCCTTCTCTGGAAAGGGATCCAGTTAGAAACCTCAATGGGAAGTCTCGAATTCGCATCCATGGTCGCCTCCTTGCTCGCTCTCTCCCAAGGCATCACCCTCTTGCTATCCAAATCCCTGCTTCTCTTGTTCGACTACGAGAGACCCTACTACTACGAATACGCCGTCGGATTCTCCGGCGTCCTCTTCGCCATGAAGAATTACACCGCCGTACACGGCGTGGTGGTTCCGTCTCGTTACGCCGCCTGGGCCGAATTGATCCTCATCCAGATGTTCGTTCCGGGTGTCTCGTTCCTCGGTCACCTCGCGTTGAATTGGCCTGTTAGGTTCTTCCGCGAGGTTTTTGGGTTTAGGAGGGGACGGATCTCCGAAGGAGTGCTCACTCTTCTGCCGTGTGGAGGTGCCAGGCTTGTACCTATGACAATTCGGATGTGTGGGACGAGTAGGGGTGAGAGTGGAAGTGGAAGTGGAAGTGGAGTGTCTTCTTTTCAGTGGAGCCGTGATTCCGATTCCCTTCCTTTGGATGAATTACGGCGCCGAAGAATTGAGAGGAAAGGGAATAATGTGGTGCGTCATAAAGCGGGTAAAGTGCTTGAATGTTCGGCCAATGAGTTTCTACTGAGAGCAGCGGGCAGTGGAATGGGAGGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	149422	156194	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0004190 aspartic-type endopeptidase activity

GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000538.1	PF00026.18	Asp	76	429	1.90E-104
Glyur000012s00000538.1	PF01694.17	Rhomboid	549	691	1.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.760
SRR1783600	control	21.571
SRR1783602	moderate drought stress	21.325
SRR1811619	moderate drought stress	20.957

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.828
DRR006520	Root Summer glycyrrhizin high producing strain	5.777
DRR006521	Root Winter glycyrrhizin high producing strain	8.018
DRR006522	Root Winter glycyrrhizin high producing strain	7.841
DRR006523	Root Summer glycyrrhizin low producing strain	4.170
DRR006524	Root Summer glycyrrhizin low producing strain	3.990
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.324
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.761

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.818
SRR2868004	Drought Stress (root)	11.594
SRR2967015	Control (root)	10.184

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.949
SRR9715740	Leaf	61.703
SRR9715741	Leaf	34.145
SRR9715739	Root	21.033
SRR9715742	Root	20.203
SRR9715743	Root	21.952

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.283
SRR8749028	MeJA induced 9h	15.793
SRR8749029	MeJA induced 9h	13.798
SRR8749030	Uninduced	4.945
SRR8749031	Uninduced	3.117
SRR8749032	Uninduced	4.663

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.006
SRR8400027	Control - Root	10.022