Gene detail information of Glyur000012s00000536 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G43520.1 | 2.00E-18 | Transmembrane proteins 14C |
| NR | XP_003551013.1 | 2.33E-85 | PREDICTED: dachshund homolog 1-like [Glycine max] |
| Swissprot | tr|O64847|U136_ARATH | 2.00E-39 | UPF0136 membrane protein At2g26240 |
| trEMBL | tr|I1MS15|I1MS15_SOYBN | 9.00E-86 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G04830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00012 | 132549 | 135005 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000012s00000536.1 | PF03647.8 | Tmemb_14 | 128 | 221 | 1.30E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 270.707 |
| SRR1783600 | control | 272.369 |
| SRR1783602 | moderate drought stress | 301.080 |
| SRR1811619 | moderate drought stress | 299.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 225.813 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 221.801 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 839.612 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 813.756 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 496.644 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 495.437 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 49.704 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 49.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 111.662 |
| SRR2868004 | Drought Stress (root) | 97.310 |
| SRR2967015 | Control (root) | 98.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 58.666 |
| SRR9715740 | Leaf | 50.200 |
| SRR9715741 | Leaf | 58.270 |
| SRR9715739 | Root | 304.221 |
| SRR9715742 | Root | 147.413 |
| SRR9715743 | Root | 164.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 129.332 |
| SRR8749028 | MeJA induced 9h | 102.196 |
| SRR8749029 | MeJA induced 9h | 179.139 |
| SRR8749030 | Uninduced | 121.055 |
| SRR8749031 | Uninduced | 58.495 |
| SRR8749032 | Uninduced | 132.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 154.996 |
| SRR8400027 | Control - Root | 151.461 |