Gene detail information of Glyur000012s00000534.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20900.1 | 5.00E-19 | jasmonate-zim-domain protein 12 |
| NR | XP_004508059.1 | 6.44E-72 | PREDICTED: protein TIFY 3B-like [Cicer arietinum] |
| Swissprot | tr|Q9C5K8|TIF3B_ARATH | 4.00E-24 | Protein TIFY 3B |
| trEMBL | tr|G7JR45|G7JR45_MEDTR | 9.00E-70 | Uncharacterized protein {ECO:0000313|EMBL:AFK42364.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00012 | 124856 | 128438 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Tify |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000012s00000534.1 | PF06200.9 | tify | 63 | 96 | 5.50E-11 |
| Glyur000012s00000534.1 | PF09425.5 | CCT_2 | 151 | 176 | 5.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.133 |
| SRR1783600 | control | 43.459 |
| SRR1783602 | moderate drought stress | 45.556 |
| SRR1811619 | moderate drought stress | 45.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.882 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.903 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.093 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.090 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.948 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.756 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 104.161 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 103.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 79.083 |
| SRR2868004 | Drought Stress (root) | 73.204 |
| SRR2967015 | Control (root) | 82.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 502.451 |
| SRR9715740 | Leaf | 527.453 |
| SRR9715741 | Leaf | 427.849 |
| SRR9715739 | Root | 36.949 |
| SRR9715742 | Root | 67.079 |
| SRR9715743 | Root | 66.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.323 |
| SRR8749028 | MeJA induced 9h | 9.768 |
| SRR8749029 | MeJA induced 9h | 12.557 |
| SRR8749030 | Uninduced | 38.633 |
| SRR8749031 | Uninduced | 9.474 |
| SRR8749032 | Uninduced | 50.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 113.474 |
| SRR8400027 | Control - Root | 54.251 |