Gene detail

Gene detail information of Glyur000012s00000531

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G43300.1	0	HOPM interactor 7
NR	KHN45035.1	0	Brefeldin A-inhibited guanine nucleotide-exchange protein 2 [Glycine soja]
COG	YP_007567780.1	1.00E-24	RalF protein, translocated into host cells by the Dot/Icm system [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
Swissprot	tr\|F4IXW2\|BIG5_ARATH	0	Brefeldin A-inhibited guanine nucleotide-exchange protein 5
trEMBL	tr\|I1LYC1\|I1LYC1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G17610.1}

Sequence

Transcript Sequence

>Glyur000012s00000531.1
CCCAAAAATTTAGCTCTCCGTTCTAATTTCTAGAATCTCAAACTTAGGAATTGTTTGGGTGACCAAAGGAGACACAAACATTTTAGTTTAGACACACACACATACACAGACAGATCTACACCTATCTTTCTCTCCGTTGCTCCTTCCATCTCTCAGATCTCTCTTACTTTTCTGAGCTGCAATTCTAATTCCCTCTCCTCCTCACCGGAATCCAATTCCTTCGCCGTCGGAAAAGTCAGAGTGANCCTGTTTCGATTTCGGATGATCTGGATTCGCCCGCATTTCCTCGAATTTCGTTTCCAGATTCAACAGCGTCCGTGATCCCCTGAGCGCTTGCGTTGCATAGTAATTGTTTTCGAGAGAGTGATAAGAAGAAATGGCTGGAGGTGCGGCCGGGGGTTTTCTGACTCGAGCATTCGATTCTATGCTCAAGGAGTGTTCCGGCAAGAAGTATCCCGAGCTTCAGAAAGCTATTCAGAATTACACAGATATCACGAAAGAGGCCGGCCAGAAAAAGCAGAGCGAGGCTAATCAAGGTGCACCCTCGCCTGAATCTGGCAGTGCAAATGCAACTGAAGATGGAGCGGCAACTAGGACAGAAGCAGATCAGTCACAGAAGCCTAATAAGGAAAATATCACTGTTCTCTTAGCTAATGCTGGGCATACACTTGATGGAGCCGATGCAGAACTTGTTTTGAATCCACTCCGCCTTGCATTTGAAACCAAGAACTTGAAAATCCTAGAACCTGCTTTNGATTGTCTCCATAAACTTATTGCATATGACCACTTGGAGGGAGATCCTGGGTTAGACGGTGGTAAAAATGTCCCATTGTTTACAGACATTCTAAACATGGCTTGCAGTTGTATTGACAATTCATCACCTGACAGTACTATTCTCCAAGTGCTGAAGGTACTTCTCACTGCCGTGGCTTCCTCAAAATTCAGAGTACATGGCGAACCTTTACTGGGAGTTATCAGAGTATGCTACAATATTGCTCTAAATAGCAAGAGTCCTATAAACCAAGCAACATCAAAGGCAATGCTGACCCAGATGATCAGCATCGTTTTCAGGAGAATGGAAACTGATCCGGTTGAAACTTCATCTGGTTCTGGTGGACATACAATTCCAGAGGCAGCTTCAGCAGAGAATTTAAACACAAAATCTGATGAAACTTCCACGGGAGACTCAAATGAAAAAGAAATGACTTTAGGTGATGCACTTAGTCAAGCCAAGGATGCATCTCCAACTTCTCTTGAGGAACTCCAAAATCTTGCCGGGGGTGCTGATATCAAGGGCTTAGAAGCTGTACTGGACAAGGCTGTGCATACTGAAGATGGTAAAAAAATAACACGTGGGATTGATTTGGAGAGCATGAGTATAGTACAACGTGATGCTTTGTTGGTATTCCGTACCCTTTGCAAGATGGGTATGAAGGAAGATAACGATGAAGTTACAACCAAGACAAGGATATTGTCTCTTGAGCTTCTGCAGGGTTTGTTGGAGGGTGTGAGCCACTCATTTACAAAGAACTTCCATTTTATTGATTCAGTGAAGGCATACCTTTCGTATGCATTATTACGAGCTTCAGTTTCACAATCCCCTGTCATATTTCAGTATGCAACGGGAATATTCTTGGTGCTGTTATTACGATTCAGGGAGAGTCTCAAAGGTGAAATAGGCATCTTCTTTCCGTTGATAGTTCTTAGACCACTGGATGCTTTAGAATTTCCTCTCAACCAAAAACTTAGTGTTCTTAGAATGTTAGAGAAAGTATGCAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGACTGTGACCTTGAGGCGCCAAACTTGTTTGAACGAATGGTTACAACTCTGTCCAAAATAGCTCAAGGGACTCAAAATACTGATCCAAATTCAGTTGCTGTTTCTCAAACAGCTTCAATTAAAGGTTCATCACTTCAAGGTCTTGTGAGTGTTCTTAAATCACTGGTTGATTGGGAACAATCGCATAGGGGATTAGAAAAGTTAAAGCAAAATCAGCAAGAAGGGGTTTCAGCTGATGATTCTTTAGAAATAAGATCCAGGGAGGANGTGACTAGTGATTTTGAGAAGGCCAAGGCTCATAAATCCACATTGGAGGCTGCCATTGCTGAGTTCAACAGGAAACCAATGAAAGGGGTGGAGTATCTAATATCAAATAAGTTGGTGGAAAACACACCTGCTTCAGTTGCTCAATTTTTGAAAAGCACACCCAATTTGGACAAGGCTACAATTGGTGACTATTTAGGTCAACATGAAGAGTTTCCCCTTGCTGTGATGCATGCTTATGTAGATTCCATGAAATTTTCTGGAATGAAATTTGATACTGCAATCAGGGAGTTTCTTAAAGGATTTCGACTTCCTGGGGAAGCTCAAAAGATAGATCGAATCATGGAAAAGTTTGCAGAGAGATACTGTGCAGACAATCCAGGCCTTTTTAAAAATGCAGATACAGCATATGTTCTTGCTTATGCTGTTATTATGTTAAATACTGATGCTCATAACCCAATGGTGTGGCCCAAGATGTCCAAGTCAGATTTTGTTCGAATGAATGCTAGGGATGATCCAGATGAATGTGCGCCTAAAGAACTTCTCGAAGAGATCTATGATTCCATTGTCAAAGAAGAGATTAAAATGAAAGATGACACATCTTTTATGGGAAAAAGCAGCAGACAGAAGCCAGAAGGTGAAGAAGGACGACTTGTTAGTATTCTTAACCTGGCACTCCCCAAAAGTAAGTCATCAGGAGATGCCAAGTCTGAAAGTGAGGCTATCATTAAGAAAACACAAGCTATATTCAGGAATAAAGGGGTGAAAAGAGGAGTTTTCTACACTGCCCAGCAGATTGAACTTGTAAGGCCCATGGTAGATGCGGTTGGGTGGCCTTTGCTTGCTACTTTCTCCGTAACTATGGAGGAAGGTGAGAATAAGCCTCGTGTTGTTCTGTTGATGGAGGGCTTTAAAGCTGGCATACATATTACATATGTGCTTGGAATGGATACCATGCGCTATGCATTTTTAACATCTCTAGTCAGGTTCACTTTCTTGCATGCCCCCAAGGAAATGCGTAGTAAAAATGTGGAAGCTTTACGGACGCTGTTGATTATTTGTGACTCAGACATGAATGCCCTTCAAGACACATGGAATGCAGTTCTGGAATGTGTTTCTCGCCTTGAATTTATAACAACAACTCCATCAATTTCTGCCACTGTCATGCATGGATCAAATCAAATCTCCAAGGATGCTGTTATTCAATCTCTGAGAGAATTAGCTGGAAAGCCTGCTGAACAAGTGTTCATGAATAGTGTTAAACTACCTAGTGATTCGGTTGTGGAATTCTTCACTGCTCTTTGTGGTGTATCTGCTGAAGAGCTAAAGCAAACTCCAGCTCGTGTTTTCAGCTTGCAAAAGCTTGTTGAAATTAGTTATTACAATATGGCTCGTATACGTATGGTCTGGGCTAGAATCTGGTCTGTTCTAGCAAATCACTTTATATCAGCTGGGAGTCACCATGATGAGAAAATTGCTATGTATGCCATAGATTCTCTAAGACAACTTGGTATGAAGTATTTGGAGCGTGCTGAACTGGCCAATTTCACTTTCCAAAATGATATTCTCAAACCATTTGTTGTTCTTATGCGGAACAGTCAAAGTGAATCCAAAAGGAGGCTAATTGTTGATTGCATTGTTCAGATGATAAAATCTAAGGTTGGAAGCATAAAATCTGGGTGGCGTAGTGTTTTTATGATTTTTACAGCTGCTGCAGATGATGAATTGGAGTCAATTGTTGAGAGTGCATTTGAAAATGTTGAACAGGTCATCTTAGAACACTTTGATCAAGTAGTGGGAGACTGTTTCATGGATTGCGTGAATTGTCTGATCAGGTTTGCAAACAATAAAACTTCACATCGAATTAGTTTGAAGGCTATTGCACTCCTGCGGATCTGTGAGGACCGTCTTGCAGAGGGTCTTATTCCTGGAGGTGCTTTAATGCCTATTGATGCTAATTTGGATGCAACTTTGGAGGTAACTGAGCATTATTGGTTCCCGATGCTGGCTGGTTTATCTGATCTAACATCAGATCAAAGACCAGAGGTCAGAAGTTGTGCACTTGAAGTCTTGTTTGATTTACTGAATGAAAGAGGCAGCAAGTTCTCAACATCATTTTGGGAGAGTATTTTCCATCGAGTTCTATTTCCAATTTTTGATCATGTGAGACATGCTGGAAAGGAGGGCTTTAGTTCTACTGATGATGATTGGTTTCGTGAGACAAGCATACATTCACTTCAGCTGCTATGCNACCTTTTCAACACATTCTATAAGGAGGTTTGTTTTATGCTGCCACCATTGCTGAGTTTGCTGTTAGATTGTGCCAAAAAGACAGATCAAACGGTGGTCTCAATATCTCTTGGTGCGCTGGTGCATCTCATCGAAGTTGGTGGTCATCAATTCAGTGAGAGTGACTGGGACATGCTACTTAAAAGCATTAGAGATGCGTCATACACAACACAACCTCTAGAGCTGCTTAATGCTTTGAGTTTTGAAAATCTAAGATACCATGAAGGTATTATTAGAGATTCTGAGGCCAATGCAGCTGACAGTGTTACTGTAAAGTCTATTGACAATGAGGTAGTGGGTGACCATCAACTTGATATCAATAGTAACNGGAAATTATCCCCACTTGCATCCTCAAATGCAAATGCTGATGGAGTTGAAGATTCAGTATCACAGGCAAATGTAGATCAGTCTGAAGGCCTTCCATCTCCTTCAGGAAGAACTCCCAAAGCTGCAGATGGAGGAGGCCTTCAGCGGAGCCAAACCTTAGGTCAACGGATTATGGGAAATATGATGGACAATATCTTCCTTCGAAATCTTACTTCAAAATCTAAAAGCCCTGTATCAGATGCTTCTCAACCATCTTCTCCAGTTAAGGTTGCTGATACTGTAGAGCCTGATACCAAGAATGAGGAGAGTCCTTTGCTAGTAACTGTCAGAGGAAAGTGCATTACACAATTATTGCTTCTTGGTGCAATTGATGGTATTCAGAAGAAATATTGGACAAAATTAAAAGCGTCACAGAAGATTGATATAATGGATATTTTGCTGTCTTTGTTGGAGTTTGCTGCTTCATATAACTCATCCACCAGTCTAAGAACTCGCATGCATCAAATTCCTGATGAAAGGCCACCAATAAATCTTCTTCGTCAGGAATTAGCTGGTACTGGCTTATATCTGGACATCTTACAAAAAGCAACTTATGGGTTTGAAGCAAACAAAGACAAATGTCCAGAGTCTGATGAATTTCAAGATGGTGATTCCACACCGGACAATGGCTCGAGTATTACTCAACATTCTGATGCAGAAGAGAAATTTGAAAAGGTAGCTGAGGAGAAATTGGTGTCTTTCTGTGAACAGGTGCTCAGGGAGGCATCTGACCTCCAGTCTAGTACTGGAGAAACCACTAATATGGATATTCATCGTGTCTTGGAGCTGCGTGCTCCTATCATTGTAAAGGTGCTTCAAAGCATGTGCTTTATGAACAATAAGATTTTCAGAAGACACCTAAGAGAATTCTATCCCTTGCTAACAAAACTTGTTTGCTGTGACCATATGGATGTTCGGGGAGCTCTTGGTGATCTATTCCAAGCACAACTGAAAGCTCTTTTACCATAATTATATTGTAATGCTGCTGTTAGGATCCTCGGAGATAAATTCTTCAGCGCATTGCCGATGTCAATTTTAGGTGGCTTGGAAAGAAGAAATATTGTAGTCTTTTTGTATTAATTATTTTATGAAAATTTTGTGCTGGCACTAACAGTTTTGTAGAAAGGCAATAGAAATGTAATTTTGGTTTCATCCGACATCCCAATATTCGTTTGCACTTAACTCCATTTGTCTGTGCAGTATGTGGACTGACTAGCTGAACCTCTGGTTGATGTTTTCAATCANGCATTTGTTGTATGATAATAGGCGCCGTGTACCATGTGAAACCCTNATGTCTTTCATGAGGAGAAATTTCAAATATTTGCTAATGTATACAACACAGGAGGAAAAAAGTAGCAGCTCTCCCTCATCTTTTTCCGTTTCTGTTTCACTTTTTTTTCTTTTTCTTTCTGACGTATTCAGACTTTTAATTTGGCTCTTAAAACGTCTCATACTTCTTGTAAGTCTGTCATATAAGCATTTTCTATTGAATATTTTTCGGGGGTGCCGGGTCGTGACTGAATTTATGGATTATTAAGTTGAGGAAAACATTTTGAGCTGGTCTCTTGTCAACCCTTTAGTGTGAACACGGTTGGTGATGCGTTGCAACAACATTGTTCCCCATGCTTGCTTCTGC

Protein Sequence

>Glyur000012s00000531.1
MAGGAAGGFLTRAFDSMLKECSGKKYPELQKAIQNYTDITKEAGQKKQSEANQGAPSPESGSANATEDGAATRTEADQSQKPNKENITVLLANAGHTLDGADAELVLNPLRLAFETKNLKILEPAXDCLHKLIAYDHLEGDPGLDGGKNVPLFTDILNMACSCIDNSSPDSTILQVLKVLLTAVASSKFRVHGEPLLGVIRVCYNIALNSKSPINQATSKAMLTQMISIVFRRMETDPVETSSGSGGHTIPEAASAENLNTKSDETSTGDSNEKEMTLGDALSQAKDASPTSLEELQNLAGGADIKGLEAVLDKAVHTEDGKKITRGIDLESMSIVQRDALLVFRTLCKMGMKEDNDEVTTKTRILSLELLQGLLEGVSHSFTKNFHFIDSVKAYLSYALLRASVSQSPVIFQYATGIFLVLLLRFRESLKGEIGIFFPLIVLRPLDALEFPLNQKLSVLRMLEKVCKDPQMLVDIFVNYDCDLEAPNLFERMVTTLSKIAQGTQNTDPNSVAVSQTASIKGSSLQGLVSVLKSLVDWEQSHRGLEKLKQNQQEGVSADDSLEIRSREXVTSDFEKAKAHKSTLEAAIAEFNRKPMKGVEYLISNKLVENTPASVAQFLKSTPNLDKATIGDYLGQHEEFPLAVMHAYVDSMKFSGMKFDTAIREFLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYAVIMLNTDAHNPMVWPKMSKSDFVRMNARDDPDECAPKELLEEIYDSIVKEEIKMKDDTSFMGKSSRQKPEGEEGRLVSILNLALPKSKSSGDAKSESEAIIKKTQAIFRNKGVKRGVFYTAQQIELVRPMVDAVGWPLLATFSVTMEEGENKPRVVLLMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLIICDSDMNALQDTWNAVLECVSRLEFITTTPSISATVMHGSNQISKDAVIQSLRELAGKPAEQVFMNSVKLPSDSVVEFFTALCGVSAEELKQTPARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLGMKYLERAELANFTFQNDILKPFVVLMRNSQSESKRRLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDELESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGALMPIDANLDATLEVTEHYWFPMLAGLSDLTSDQRPEVRSCALEVLFDLLNERGSKFSTSFWESIFHRVLFPIFDHVRHAGKEGFSSTDDDWFRETSIHSLQLLCXLFNTFYKEVCFMLPPLLSLLLDCAKKTDQTVVSISLGALVHLIEVGGHQFSESDWDMLLKSIRDASYTTQPLELLNALSFENLRYHEGIIRDSEANAADSVTVKSIDNEVVGDHQLDINSNXKLSPLASSNANADGVEDSVSQANVDQSEGLPSPSGRTPKAADGGGLQRSQTLGQRIMGNMMDNIFLRNLTSKSKSPVSDASQPSSPVKVADTVEPDTKNEESPLLVTVRGKCITQLLLLGAIDGIQKKYWTKLKASQKIDIMDILLSLLEFAASYNSSTSLRTRMHQIPDERPPINLLRQELAGTGLYLDILQKATYGFEANKDKCPESDEFQDGDSTPDNGSSITQHSDAEEKFEKVAEEKLVSFCEQVLREASDLQSSTGETTNMDIHRVLELRAPIIVKVLQSMCFMNNKIFRRHLREFYPLLTKLVCCDHMDVRGALGDLFQAQLKALLP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	90531	110130	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0032012 regulation of ARF protein signal transduction

molecular_function

GO:0005086 ARF guanyl-nucleotide exchange factor activity

GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000531.1	PF12783.2	Sec7_N	335	490	1.60E-39
Glyur000012s00000531.1	PF01369.15	Sec7	578	762	1.80E-63
Glyur000012s00000531.1	PF09324.5	DUF1981	1073	1158	6.70E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.381
SRR1783600	control	25.550
SRR1783602	moderate drought stress	24.512
SRR1811619	moderate drought stress	24.379

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.948
DRR006520	Root Summer glycyrrhizin high producing strain	19.702
DRR006521	Root Winter glycyrrhizin high producing strain	16.643
DRR006522	Root Winter glycyrrhizin high producing strain	16.091
DRR006523	Root Summer glycyrrhizin low producing strain	18.256
DRR006524	Root Summer glycyrrhizin low producing strain	18.165
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.855
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.837

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.506
SRR2868004	Drought Stress (root)	34.728
SRR2967015	Control (root)	36.841

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.812
SRR9715740	Leaf	12.414
SRR9715741	Leaf	15.712
SRR9715739	Root	3.271
SRR9715742	Root	31.684
SRR9715743	Root	27.031

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.306
SRR8749028	MeJA induced 9h	26.473
SRR8749029	MeJA induced 9h	14.531
SRR8749030	Uninduced	9.486
SRR8749031	Uninduced	7.963
SRR8749032	Uninduced	7.441

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.284
SRR8400027	Control - Root	44.632