Gene detail

Gene detail information of Glyur000012s00000530

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20870.1	2.00E-145	O-Glycosyl hydrolases family 17 protein
NR	XP_004508054.1	0	PREDICTED: glucan endo-1,3-beta-glucosidase 5-like [Cicer arietinum]
Swissprot	tr\|Q93Z08\|E136_ARATH	3.00E-165	Glucan endo-1,3-beta-glucosidase 6 (Precursor)
trEMBL	tr\|I1LYC0\|I1LYC0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G17600.1}

Sequence

Transcript Sequence

>Glyur000012s00000530.1
ATGGGATTCCAACGTTTTACTACGTGCTTTTTGTTAGCACTTTGCATACTAAGCCAAGGTTTGGCAAAAGGTGCCCTTGGCTTTGCTTTCAACTGGGGAACGCGTACAACGCATCCTCTTCCACCTCAAGTACTCGTGAAACTATTGAAGGACAATGGAGTCAACAAAGTGAAGCTCTTTGAGGCTGAACCCTCGGCACTTAAGGCTCTTGGTAATTCTGGCATTCAGATTCCCTTGCTAACAATGTCAATGCCGCAATTGCATGGGTCAACCAAAATGTATGTTGCTGTGGGCAATGAAGCTTTTCTCAAAACATACAATGGTCGATTTGTGAAATCCACTTTTCCAGCCATCAAGAACATTCAAGCGGCCCTTATAAAAGCTGGGTTAGGAAGGCAAGTGAAGGTGACTACCCCATTAAACGCTGATGTGTACCAGAGTGATAGTGGTCTTCCATCAGGTGGAAACTTCAGGCCAGACATTCAAGACCAAATGACCTCCATAATCAAATTCCTTAGCCAAAACGGTGGCCCTCTAACCTTCAACATCTACCCATTCCTTAGCCTTGATGCTGATCCCCACTTCCCAAAAGAGTTTGCTTTCTTTGATGGTTCTGCTGCCCCTGTAGTTGATGGCTCCATAACCTACACCAATGTCTTTGATGCAAACTTTGACACCCTCATTTCAGCTCTTGAAAAGAATGGTTTTGGGTCAATGCCTGTCATAATTGGAGAAGTTGGTTGGCCAACAGATGGAACCGCCAATGCCAACATAAAGAATGCACAAAGGTTCAACCAAGGCCTAGTTAACCGCATAGTGAAAAAGCAAGGATCCCCAAAGAGACCTGCCCCACCAGAAATCTACCTTTTTGGACTCTTAGATGAGGATGCCAAGAGCATTGAGCCTGGCCCTTTTGAGAGACATTGGGGTGTCTTCAATTTTGATGGTTCCATGAAATACCCTTTGAATCTTGGTGGGGGAAAATCATTGGTAGGTGCAAAAGGGGTGAGGTATTTGCCTAAGCAATGGTGTGTTATGTCAGCACAAGCAAATGCTAATGACCCTGGTTTGGCTGATAGTATGAGCAAGGCTTGTACATATGNTGATTGCACATCTCTTGCTCCTGGTTCTTCTTGTAGTGGGTTGGACACAAAGGGTAATGCTTCATATGCATTTAATGCGTACTATCAGACCATGGACCAGCGCAAAGATGCATGNCAATTCAATGGTCTCTCAGTTGTCACTAACATTGATCCTTCACCTCCTCAAGGTAGTTGCCACTTTAAGATCATGATTGATCTTGGGAAGCATGAGAAGAAGGCCACTTCTTTGGCTGCACCAAAAAGTGGAATGCAATCAATGGTCATGCTGGTATCAAGCTTCATGTTCACTGTTATGTTGTCTTTATGGATGTAGTTTTATTTGTGTTGTGCAGAGACAGAGTATCATAACTTCACACACCGTCGATTTTTATTTTTTATTTTTTNGAGGGCATATTATTCTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	87524	89427	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000530.1	PF00332.13	Glyco_hydro_17	92	323	4.00E-53
Glyur000012s00000530.1	PF07983.8	X8	342	411	1.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.483
SRR1783600	control	3.566
SRR1783602	moderate drought stress	2.939
SRR1811619	moderate drought stress	2.934

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.202
DRR006520	Root Summer glycyrrhizin high producing strain	7.368
DRR006521	Root Winter glycyrrhizin high producing strain	0.073
DRR006522	Root Winter glycyrrhizin high producing strain	0.072
DRR006523	Root Summer glycyrrhizin low producing strain	10.731
DRR006524	Root Summer glycyrrhizin low producing strain	10.722
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.241
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.151

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.971
SRR2868004	Drought Stress (root)	16.838
SRR2967015	Control (root)	15.233

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.192
SRR9715740	Leaf	1.145
SRR9715741	Leaf	1.175
SRR9715739	Root	3.333
SRR9715742	Root	9.860
SRR9715743	Root	8.548

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.407
SRR8749028	MeJA induced 9h	0.188
SRR8749029	MeJA induced 9h	0.369
SRR8749030	Uninduced	0.248
SRR8749031	Uninduced	0.092
SRR8749032	Uninduced	0.530

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.462
SRR8400027	Control - Root	5.264