Gene detail

Gene detail information of Glyur000012s00000523.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G43270.1	0	Plant invertase/pectin methylesterase inhibitor superfamily
NR	XP_004508051.1	0	PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Cicer arietinum]
COG	YP_003091437.1	1.00E-51	pectinesterase [Pedobacter heparinus DSM 2366]
Swissprot	tr\|Q43062\|PME_PRUPE	0	Pectinesterase PPE8B (Precursor)
trEMBL	tr\|W9RVY7\|W9RVY7_9ROSA	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000012s00000523.1
CCTGATTTTCACCTTGAGTTGAGAGGCCGAAGCATTGTTAAATTCCCCGCATCTAACTAATTAACCAACACTAGTAGCCAATCAAAGTGGATTCTTTCTTCCAATTCGTTTCCCTCCCCTTTAAATACCCAACACCTTCTCACTTAGTTNTTTGCCCTGCCACAACAATAGTGGCAGTAGTGATCATCTCGCCCTCACTTCTACTCCTCCTCGTTTGTTATTCTCCTTCTAATTAATTAATCTAAACATGGCTCTGTTTTCCTCCACAAAACAACCATCGCCAAAGACAACACTAACCACCACACTCATCTCGTTACTACTACTGGTAATGCTCTCTCTGCAGGGATCGTCTGCTCCGAGTCCCACTGATTTCGTGGGATCAACATGCCTCAAAGTTTCTCCCACCGAGTTCGTTGACTCAGCCAGGGAAGTTATCGCTATTGTAGAACAGGTTGCATCCATTCTTTCACGCTTCAGCAGTGGCTTCGGCAACTTCCGTCTCTCAAACGCCATTTCCGACTGCCTCGATTTGCTCGACATGTCCTCCGACGAGCTCACNTGGTCTGCTTCCGCCTCTCAGGCTCCCAAAGGGAAGCATAACNGTACAGGGGATCTGAGATCTGATTTGAGGACGTGGCTGAGTGCTGTACTTGTGAATCCGGAGACATGCATGGAGGGATTNGAAGGTACGAATAGCATTGTTAAGGGTCTCGTGTCGGGTGGTCTTGGCAGAGTGATTTCGCTGGTGAGTAATCTGCTTGTTCAAGTGGTCCCCAATTCTGTCTCCGATGATCAATTCTCCTCCGCCGGCGGCGGCAACGGCNAGGGTCATCGGTTTCCTCCGTGGGTTAAAAAGGGTGACAGGAAGCTGCTTCAGGCAAATGGGGTGGCCTTCGACGCTGTGGTGGCTGCCGATGGGAGTGGCGACTANAAGACGGTCATGGATGCGGTGCTGGCGGCACCCGATTATAGCATGAAGCGACACGTCATATACGTGAAAAAGGGTGTTTATGTGGAGAACGTTGAGATCAAGAAGAAGAAGTGGAACATCATGATGATAGGGGATGGAATGGATGCCACTGTTATCTCCGGTAGCCGGAGTGTTGTCGACGGTTGGACCACNTTCCGATCAGCTACCTTCGCTGTCAGTGGCAGAGGGTTCATAGCACGAGACATATCGTTTCAGAACACAGCAGGGCCTGAGAAGCACCAAGCAGTGGCACTNAGATCAGACTCTGACCTCTCAGTATTCTACCGNTGTGGGATCTTCGGTTACCAAGACAGCCTCTACACCCACACCATGCGCCAGTTCTACAGAGAATGCAAAATCACAGGCACAGTGGATTTCATCTTCGGAGACGCCACAGCAATGTTCCAAAACTGCCAAATCAAAGCCAAGAAAGGGTTACCAACCCAAAAGAACACCATCACAGCACAAGGGAGGAAAGACTTAAACGAACCAACAGGTTTCTCCTTCCAATTCTGCAACATCTCTGCAGATTCTGACCTTTTGCCATCAGTTAGCACCACAATGACATACCTTGGAAGGCCATGGAAGACTTACTCACGAACCGTTTTCATGCAATCGTACATGACCAACGTGATAAGGCCAGAAGGGTGGATGGAGTGGAGTGGGAATTTTGCATTGGACACNTTGTACTATGCAGAGTACATGAACACTGGACCAGGTGCTGGACTTNCTAACCGAGTGAATTGGCCAGGGTNCCATGTATTGAATAATTCTGGCCAGGCTAATCACTTCGNCGTCGCTGAGTTCATTGAGGGGAATCTATGGTTACCTTCCACAGGTTTTAAGAAGAAGACAAATTTAGAAACTGACAAATCTTCTTGTTATGTCCTGGTAATCTTTACTTCATCTCCCAAACTCTTCCTCCTAATTCTCTTAACAATCTTCAACTCACAGTCACACACTTGGGCTGTGAACTCCTCCAATATTCCTTCCACAACAACATTGCATGCAATTGCAAACATCTCTTCCTTAAAATCTCTCTGCAGAACTACCCCATACCCTGAAGTTTGCTTCAACTCATCCAAGCTATCCATCTCGATAAACATAAACCCAAACATCATCACCATCCTTCTCGAATCCCTCCAAGGAGCAATATCTGAAGCCACAAAGCTATCTGATCTATTCAACAATGCAGGGCACTCAAATATCATAGAGAACAAAAGAGGAGCTATCCAAGACTGTAGAGAACTTCAACAATCCACCTTNGCTTCCTTAAAACGATCATACTCAGGTATTCGTTATTCTTCAAACTCAAGGAAGTTAGTTGATGCAAGAACCTACCTCAGTGCAGCACTTACCAACAAGAACACGTGTCTAGAAAGCTTAGATTCTGCTTCGGGTACCCTGAAGCCAGTTCTAGTGAATTCTGTTATCAACACTTACAAGCATGTCAGCAATTCTCTTTCAATGCTTCCTAAACCTGAGATGAGAACCCCAAAGCCAAAGGGGCGCAAGAACCGGCGTNTGATGGAAGCTCTAACTTGGTTGTCAAGTAAAGATAGCTTCTTGCAAAGAAGTAGTAGCACCAATGAATATGATGCGATTGTTGTGGCTGCTGATGGAACCGGGAACTTTACCACCATCACTGAAGCCATAAACTTTGCTCCAAATAACAGCTTTGATAGGACAATAATCTATGTGAAGGAAGGGGTATANGAGGAAAATGTGGAGGTCCCAAGTTATAAGACCAATGTTGTTCTGCTTGGTGATGGAAGTGATGTCACTGTCATTACTGGCAGTAGAAGTGTTGATGATGGCTGGACCACTTTCAGATCTGCAACTTTAGGGCCAGAGAAGCATCAAGCAGTTGCCCTGAGAGTGAATGCAGACTTGACAGCTTTCTACAGGTGTGCAGTGTATGGTTACCAAGACACTCTCTATGTTCACTCCTTTAGACAATTCTACAGAGAGTGTGACATATTTGGGACCATAGATTTCATCTTTGGCAATGCAGCAGTGGTTTTTCAGGCATGTAACATTGTGTCCAGAATGCCATTACCTGGCCAATCCACTGTCATCACAGCACAGTCCAGAGATTCCCCTGATGAGGACACAGGCATCTCAATCCAAAACTGCTCAATAGTGGCAACCACTGATTTGTATTATAACNCCAGCAGCTTCAAGAGCTACCTTGGTAGGCCATGGAGGCTCTATTCTCGTACTGTGTACCTTGAGTCTTACATTGATGTCTTCNTTGACCCAATGGGGTGGACTAAGTGGTCTAATGATGATGGTCAAGACTTAATGGACACTTTGTATTATGGAGAGTATGCGAATTATGGGCCTGGTTCAGGGACAGATAACCGAGTCAATTGGCAAGGGTACCATTTAATGGATTACTATAGTGCCTATAACTTCACGGTTTCAGAGTTCATTATTGGTGATGCTTGGCTTGGGTGGAGCAAAGCAGAGAAACCGCAATCACCGACGGAAGGTGACGATTTTGACCTCATCTCAGAACGCCGAAGAAATGAGAAGAAACAAAAGCTGAGGAAGAGAATCCTCATAGGCGTTGTTTCCACCGTTGTTGTCATTGGTCTCATAGGCGCTGCCTTCTTCGTCGCCACCGACACAAAATACTTTGGTAACAACAACAAGAAGGAGGAGGGAAAAAAAGATGCCCCATCTGAGAGCAACAAGCACGTGTCACATTCACAAAGGATAGTGAAGATTGTGTGCAGCTCCGCTGACTACAAAGACAAATGTGAGGGACCCCTTAACAAGGCAATGGCGGATGACCCGAAACTCACACACCCAAAAGACCTTCTCAAAGTCTANGTAAAGTTTTCTGAGGATGAGGTCAACAAGGCCTTTGACAAAGTAACCAGCTCCTTCAAGTTTGAATCCGAAGAAGAAAAAGGAGCATTTGAGGATTGCAAGCAGCTGTTTATTGATGCAAGGGATGATTTGAACACATCAACCTCTGAGCTTGAAAAGATTGAACTCAAGAGGCTAACCGCAAGAACTCCTGACTTAAACAGCTGGCTCAGTGCTGTCATATCTTTCCAACAGACATGTGTGGATGGTTTCCCCGAAGGGAAGTTGAAGAATGATCTCCAGGATCTTTTCAAGGATTCCAAGGAATTCATTAGCAACTCACTTGCCATTGTGTCTCAGGCTTCCACGGTCCTTTCCACAATGCAAACACTTGCACGTGGCCGTTTGTTGCTATCGGCAGAGAATTCCAACTCCGATAACTCCCCAGTTGCTTCTTTGGATTCTGATGGATTCCCTTCTTGGGTCCACTCTGAGGACCGAAGGGTATTGAAGGCTGCGGATAACAGACCTGAGCCTAATGTCACAGTTGCAAAAGATGGCATGGTGGTAGGGGAAGGATTCTTGGGTCTGGCAATGGGATTCAGAAACACAGCTGGGCCAGAAGGGCATCAAGCAGTGGCAGCCAGAGTGCAAGCAGATCGTGCAGTGTTTGCAAACTGTCGCTTCGAGGGGTACCAAGACACCCTATACACACAAGCCCACAGACAGTTCTACCGTAGCTGCATCATATCAGGCACAATCGACTTCATCTTCGGCGACGCAGCTGTGGTGTTCCAGAACTGCATCATGGTCATTAGGAAGCCAATGGAGAACCAGCAGAACATAGTGACAGCTCAGGGAAGAATGGACAAGCAACAAGCCACTGGCATTGTCCTTCAAAAGTGTGATATCAAAGCTGATGACTCGCTTGTTCCCGTGAAGGACAATATCAGGAGCTACCTTGGGAGGCCATGGAAGGAATACTCAAGGACCATTGTGATGGAATCTGAGATAGGTGATATGATTCACCCTGATGGGTGGATGCCTTGGACGGGTGACTTTGCACTCAAAACACTATACTATGCTGAGTACAACAACACTGGACCAGGTGCCAGCACAAGTGGTAGGGTCAAGTGGCCTGGTTATAAGGTCATTAACAAGGAGGAGGCTACCAAGTTCACTGTGGGGACTTTCTTGAAAGGCACTTGGGTGCAGGGATCAGGTGTACCTTCTGTGCAGGGCTTGTACAACTAA

Protein Sequence

>Glyur000012s00000523.1
MALFSSTKQPSPKTTLTTTLISLLLLVMLSLQGSSAPSPTDFVGSTCLKVSPTEFVDSAREVIAIVEQVASILSRFSSGFGNFRLSNAISDCLDLLDMSSDELTWSASASQAPKGKHNXTGDLRSDLRTWLSAVLVNPETCMEGXEGTNSIVKGLVSGGLGRVISLVSNLLVQVVPNSVSDDQFSSAGGGNGXGHRFPPWVKKGDRKLLQANGVAFDAVVAADGSGDXKTVMDAVLAAPDYSMKRHVIYVKKGVYVENVEIKKKKWNIMMIGDGMDATVISGSRSVVDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKITGTVDFIFGDATAMFQNCQIKAKKGLPTQKNTITAQGRKDLNEPTGFSFQFCNISADSDLLPSVSTTMTYLGRPWKTYSRTVFMQSYMTNVIRPEGWMEWSGNFALDTLYYAEYMNTGPGAGLXNRVNWPGXHVLNNSGQANHFXVAEFIEGNLWLPSTGFKKKTNLETDKSSCYVLVIFTSSPKLFLLILLTIFNSQSHTWAVNSSNIPSTTTLHAIANISSLKSLCRTTPYPEVCFNSSKLSISININPNIITILLESLQGAISEATKLSDLFNNAGHSNIIENKRGAIQDCRELQQSTXASLKRSYSGIRYSSNSRKLVDARTYLSAALTNKNTCLESLDSASGTLKPVLVNSVINTYKHVSNSLSMLPKPEMRTPKPKGRKNRRXMEALTWLSSKDSFLQRSSSTNEYDAIVVAADGTGNFTTITEAINFAPNNSFDRTIIYVKEGVXEENVEVPSYKTNVVLLGDGSDVTVITGSRSVDDGWTTFRSATLGPEKHQAVALRVNADLTAFYRCAVYGYQDTLYVHSFRQFYRECDIFGTIDFIFGNAAVVFQACNIVSRMPLPGQSTVITAQSRDSPDEDTGISIQNCSIVATTDLYYNXSSFKSYLGRPWRLYSRTVYLESYIDVFXDPMGWTKWSNDDGQDLMDTLYYGEYANYGPGSGTDNRVNWQGYHLMDYYSAYNFTVSEFIIGDAWLGWSKAEKPQSPTEGDDFDLISERRRNEKKQKLRKRILIGVVSTVVVIGLIGAAFFVATDTKYFGNNNKKEEGKKDAPSESNKHVSHSQRIVKIVCSSADYKDKCEGPLNKAMADDPKLTHPKDLLKVXVKFSEDEVNKAFDKVTSSFKFESEEEKGAFEDCKQLFIDARDDLNTSTSELEKIELKRLTARTPDLNSWLSAVISFQQTCVDGFPEGKLKNDLQDLFKDSKEFISNSLAIVSQASTVLSTMQTLARGRLLLSAENSNSDNSPVASLDSDGFPSWVHSEDRRVLKAADNRPEPNVTVAKDGMVVGEGFLGLAMGFRNTAGPEGHQAVAARVQADRAVFANCRFEGYQDTLYTQAHRQFYRSCIISGTIDFIFGDAAVVFQNCIMVIRKPMENQQNIVTAQGRMDKQQATGIVLQKCDIKADDSLVPVKDNIRSYLGRPWKEYSRTIVMESEIGDMIHPDGWMPWTGDFALKTLYYAEYNNTGPGASTSGRVKWPGYKVINKEEATKFTVGTFLKGTWVQGSGVPSVQGLYN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	41058	59483	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000523.1	PF04043.10	PMEI	51	172	4.30E-15
Glyur000012s00000523.1	PF01095.14	Pectinesterase	217	514	1.10E-142
Glyur000012s00000523.1	PF04043.10	PMEI	583	731	3.80E-21
Glyur000012s00000523.1	PF01095.14	Pectinesterase	776	1055	3.10E-112
Glyur000012s00000523.1	PF04043.10	PMEI	1146	1297	1.60E-25
Glyur000012s00000523.1	PF01095.14	Pectinesterase	1369	1581	1.50E-104

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.100
SRR1783600	control	5.019
SRR1783602	moderate drought stress	0.799
SRR1811619	moderate drought stress	5.538

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.948
DRR006520	Root Summer glycyrrhizin high producing strain	9.626
DRR006521	Root Winter glycyrrhizin high producing strain	2.784
DRR006522	Root Winter glycyrrhizin high producing strain	9.573
DRR006523	Root Summer glycyrrhizin low producing strain	1.355
DRR006524	Root Summer glycyrrhizin low producing strain	1.493
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.760

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.567
SRR2868004	Drought Stress (root)	15.920
SRR2967015	Control (root)	7.505

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.342
SRR9715740	Leaf	7.666
SRR9715741	Leaf	0.000
SRR9715739	Root	6.580
SRR9715742	Root	9.363
SRR9715743	Root	0.661

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.984
SRR8749028	MeJA induced 9h	12.853
SRR8749029	MeJA induced 9h	8.086
SRR8749030	Uninduced	6.290
SRR8749031	Uninduced	7.624
SRR8749032	Uninduced	13.589

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.498
SRR8400027	Control - Root	6.451