Gene detail

Gene detail information of Glyur000012s00000522

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20850.1	0	RAS associated with diabetes protein 51
NR	XP_007154535.1	0	hypothetical protein PHAVU_003G126800g [Phaseolus vulgaris]
COG	NP_558742.1	1.00E-85	DNA repair and recombination protein RadA [Pyrobaculum aerophilum str. IM2]
Swissprot	tr\|Q40134\|RAD51_SOLLC	0	DNA repair protein RAD51 homolog
trEMBL	tr\|V7C8Q6\|V7C8Q6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26529.1}

Sequence

Transcript Sequence

>Glyur000012s00000522.1
GTAAGCTTCATGCCGGTGCTGGAAATTTATTTTGGCGCCCCTTTTTGAAACCCCACATTCTTCTCTTCCCTCACATTCTTCTCCCCTCTTCTCCTTGTGTGTCCGTGCAGAAATTAGCTGCTCGTTCGCAAAAAGATTGAATCTTTGAGTGGTGAGAAAGCATGGAGCAGCAGAGACCCCAGAAAACGGTGGCCCAACAACAACAGGACGAAGGCGAAGAGGTTCAACACGGCCCTTTACCCGTCGAACAACTCCAGGCATCTGGCATAGCCTCCGTGGACGTTAAGAAGCTCAAAGATGCGGGTATTTGCACGGTTGAATCCGTTTCTTATACTCCCAGGAAGGACCTTTTGCAAATCAAAGGTATCAGTGAAGCCAAGGTTGACAAGATTATTGAAGCAGCTTCTAAGCTGGTGCCTATGGGTTTTACTAGTGCCAGTGAGCTCCATGCTCAGCGAGAAGCAATCATTCAGATAACCACGGGATCGAGAGAGCTTGACAAGATATTGGAAGGTGGAATTGAGACGGGTTCTATCACTGAGTTATATGGTGAATTTCGATCCGGGAAGACTCAGTTGTGTCACACTCTCTGTGTCACTTGCCAATTGCCACTAGATCAAGGAGGTGGTGAGGGCAAAGCTATGTACATAGATGCTGAGGGCACATTTAGGCCTCAGCGACTCTTACAGATAGCAGATAGGTTTGGACTGAATGGTGCTGATGTATTGGAAAATGTCGCTTATGCTAGAGCGTATAACACTGATCATCAATCACGGCTTCTGCTTGAAGCAGCTTCGATGATGGTGGAAACAAGGTTTGCTATAATGATAGTAGACAGTGCCACTGCCCTTTATAGGACAGATTTTTCTGGAAGGGGGGAGCTTTCAGCCCGGCAAATGCATCTTGCGAAGTTCCTGAGGAGCCTTCAGAAATTAGCAGACGAGTTTGGTGTGGCCATTGTCTTAACAAACCAAGTAGTTTCACAAGTAGACGGTTCTGCAGTCTTTGCTGGACCTCAAATCAAGCCTATTGGAGGCAACATTATGGCTCATGCTACCACAACAAGGTTGGCTCTCAGGAAAGGAAGAGGGGAAGAGCGAATCTGTAAAGTGATTAGTTCTCCTTGTTTGGCGGAAGCCGAAGCAAGGTTTCAGATTTGTGCTGAAGGAGTTTCAGATGTTAAAGACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00012	37322	39923	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006259 DNA metabolic process

GO:0006281 DNA repair

molecular_function

GO:0000166 nucleotide binding

GO:0003677 DNA binding

GO:0003684 damaged DNA binding

GO:0005524 ATP binding

GO:0008094 DNA-dependent ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000012s00000522.1	PF14520.1	HHH_5	31	82	3.30E-11
Glyur000012s00000522.1	PF08423.6	Rad51	86	341	7.70E-136

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.591
SRR1783600	control	1.326
SRR1783602	moderate drought stress	0.787
SRR1811619	moderate drought stress	0.846

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.958
DRR006520	Root Summer glycyrrhizin high producing strain	1.909
DRR006521	Root Winter glycyrrhizin high producing strain	1.218
DRR006522	Root Winter glycyrrhizin high producing strain	1.239
DRR006523	Root Summer glycyrrhizin low producing strain	0.655
DRR006524	Root Summer glycyrrhizin low producing strain	0.606
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.472
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.541

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.196
SRR2868004	Drought Stress (root)	2.707
SRR2967015	Control (root)	3.641

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.419
SRR9715740	Leaf	0.380
SRR9715741	Leaf	0.657
SRR9715739	Root	1.195
SRR9715742	Root	0.624
SRR9715743	Root	0.573

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.430
SRR8749028	MeJA induced 9h	4.025
SRR8749029	MeJA induced 9h	3.515
SRR8749030	Uninduced	1.411
SRR8749031	Uninduced	0.407
SRR8749032	Uninduced	1.003

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.371
SRR8400027	Control - Root	3.013