Gene detail information of Glyur000011s00000736.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66730.1 | 3.00E-88 | C2H2-like zinc finger protein |
| NR | XP_003527695.1 | 0 | PREDICTED: zinc finger protein MAGPIE-like [Glycine max] |
| Swissprot | tr|Q9LVQ7|IDD1_ARATH | 9.00E-123 | Protein indeterminate-domain 1 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|K7KSV3|K7KSV3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G03630.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00011 | 673366 | 676633 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000011s00000736.1 | PF12874.2 | zf-met | 46 | 68 | 0.0028 |
| Glyur000011s00000736.1 | PF00096.21 | zf-C2H2 | 123 | 145 | 0.016 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 45.959 |
| SRR1783600 | control | 45.413 |
| SRR1783602 | moderate drought stress | 64.206 |
| SRR1811619 | moderate drought stress | 63.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 50.471 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.161 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 43.737 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 42.347 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 58.569 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 58.213 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.322 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.247 |
| SRR2868004 | Drought Stress (root) | 9.281 |
| SRR2967015 | Control (root) | 13.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.680 |
| SRR9715740 | Leaf | 12.376 |
| SRR9715741 | Leaf | 23.887 |
| SRR9715739 | Root | 36.056 |
| SRR9715742 | Root | 30.228 |
| SRR9715743 | Root | 31.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 61.906 |
| SRR8749028 | MeJA induced 9h | 39.468 |
| SRR8749029 | MeJA induced 9h | 32.671 |
| SRR8749030 | Uninduced | 25.960 |
| SRR8749031 | Uninduced | 10.157 |
| SRR8749032 | Uninduced | 7.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.451 |
| SRR8400027 | Control - Root | 14.324 |