Gene detail

Gene detail information of Glyur000011s00000733

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75100.1	2.00E-53	J-domain protein required for chloroplast accumulation response 1
NR	KEH36141.1	0	heat shock protein-binding protein, putative [Medicago truncatula]
Swissprot	tr\|Q9C9Q4\|JAC1_ARATH	2.00E-57	J domain-containing protein required for chloroplast accumulation response 1
trEMBL	tr\|A0A072V389\|A0A072V389_MEDTR	0	Heat shock protein-binding protein, putative {ECO:0000313\|EMBL:KEH36141.1}

Sequence

Transcript Sequence

>Glyur000011s00000733.1
ATTTTCGTCACAANAAATTGTGCCTAAATCAAAACATGGAGCAGAGGGCGTCAGTTATCAGTATCATTACTTTTGATTTATCCTCTGAATTTTTCGCACTCTATCCATTCACATTCANTCATATATTTTGTGGTTTCGCAGTTGCCGTTAGATTTCGCTGCACCCCTCACACAAGTGCCACTCTGTCCTCTCCTTTTCAAGATTCCCCTCCCTGACCTGATTGCCGTTTCTCNCAAACCTCTCTGTTGTCTCTGCCTCTGCCTTTCGCTTCAATTTCCCGCCAGTTTTTGAACTGTGAATTGCTCATATAATACTTGTCGTTTGTGTTCAGTTGAATGGAGAGATTTCATTATTCTCAACGAGATAGCATTCTGTTAGGGTATAATAATAACGACGATAACAGCAATAACAATCCGAGCACGCCGCAGAGGAATTCGGACGTTGATTTTAACGACGTGTTTGGGGGCCCACCACGGCGGTCATCGGTAACCGAAGGGGAAGCGGGTTGGTGTCGGTGGCCTCCGGAGCGGGAGAAACCGGTGTTTGGGGAGGATAGTGGAAACAGGAGGCGTTACCCAAACAAGAACAATGACTTCTTTGACGACATTTTTGGAGGGGAAGATTCTCCGAGTGTGTGTTCGACCCCAAAGAAGCACGACGCTGACCCTTTCGCTTCCACGGTGTTGAGCCCTGCCCGTGCCGGACCTGAACTCCTTGCCTCTTCTCTCCCTCCGTCCNTCAGCCTTCCTGCCAAATTGACAAAAGGGGTGGACCTTCGANCATTTGGTTCCCCAACTAGGAGTAGGAAGCCACTCGATGTCAACGACAGTTTTGTTGCCTCAAATGGATTGGGGTCCTCAGATTCTCAGCTATCTAGATTTTCAACCCAGGCAGAGGAACATAAGGAGTTGAAAAATGATCTAAAACCATCTTACCGGCAAAGTCTTCTATCAAAGGAATTTATAAACTTGACCCTATCTGATAAAGCAGACAAAGGAAACAATATGAAACAGGACACATCTATTAGTGAAGTTTCGCCTAATACCAGTAATGGTCAGTTCCATTTCTCAATATACAAATGGGCAAGTAAAGGGGTGCCGTTGGTGATGCCTATTAGGACAGAGAGAACCTTAAGGGCAAAAGATAAGCTTAAACTTGAGAGATGCTCGAGCGCTAAGGAATGGGNGGTCAGTGAGATCACCACACAAAATGATAGTCCTTCAACATACAATAGTTCTTCTTTGACGAAAAATGGAAAACAAGATGTGTCAACTACTTCCACAACCACTCTAAAGAGGGCAGATTCACACCAGACTGTAGAACAAATAGTTTCTGCCAAAGCTCAATCAGATTCATTGAGCAGCCCTCGAACTGNTACTAAAGAAGTGTCTGGTAGTCCTATCTCATTTGACGCTAGAGCAGAATCAAGTACTCATTCTACAAGTGAGATAGTCTTCCATGGAAAAACTGAAGCAGCAAGGGAAACCCAGAAACTTGAGTCCATATCATTGAATTCTCTGTTCAGTAAAAGCGATGAGAAACAAGATTATGATGAGATTACTAGAATGGAGAGAGAAGAGAACATGATGAAAAGCTCAAAGAAGTTGACTTCTGTTTTTGATGTTACCTTGAACCCAAAGAAACAAGATCAAAAGACAGTTTCCTCGAGAGATATGGGATATAGCAAAGCTACTTTCCAGGGTTCNTTAGGCCCAGGCGAGAATATTGGGAAAGGCCAAGTTAAAGGAAAGGTGAAAGAATTTGTTCGAGTTTTCAACCAAGAAGCCNTAACAAAACCCAGTGTTCACTCCAAATCTCGGCCTCAGGATTCTACATACAAGCAGAAAGAAGCTTTAACTGCTAAGAATAATGTGGAAGGTGATCCTGAACAGTCCAAGAAGGAGATCTCTGGCTCTGCCATAGAGACCACCGATATGTCTGCTAGTAGTTTGTCTCAGCAGGATGATATCTCAGCATCAGATAAAGGCGAGTCCTTCCATGGGAATTTCACGATCCAAGTATTAGCCCAAGATGAGGGTGAGGTCTTACAAAACCAAGAAAATCAAGAAATCCAAGTCATTGACAACAAGATACAACAATGGTCTAAAGGGAAGGAAGGAAACATACGCTCGCTGCTATCAACATTACAATATGTACTTTGGCCAGAGTGTGGCTGGAAGCCTGTGCCTCTTGTTGATATAATTGAAGGGAATGCGGTGAAAAGATCTTATCAAAGAGCTTTACTCTGTCTGCATCCAGATAAGTTGCAGCAAAAGGGTGCTGCTTCAGACCAAAAGTACATCGCAGAAAAAGTTTTTGATATTTTACAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	646318	650666	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.868
SRR1783600	control	0.831
SRR1783602	moderate drought stress	1.489
SRR1811619	moderate drought stress	1.383

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.919
DRR006520	Root Summer glycyrrhizin high producing strain	0.822
DRR006521	Root Winter glycyrrhizin high producing strain	0.942
DRR006522	Root Winter glycyrrhizin high producing strain	0.931
DRR006523	Root Summer glycyrrhizin low producing strain	0.947
DRR006524	Root Summer glycyrrhizin low producing strain	0.993
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.531
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.595

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.610
SRR2868004	Drought Stress (root)	1.686
SRR2967015	Control (root)	2.261

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.807
SRR9715740	Leaf	47.604
SRR9715741	Leaf	49.805
SRR9715739	Root	0.051
SRR9715742	Root	0.678
SRR9715743	Root	0.308

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.584
SRR8749028	MeJA induced 9h	0.953
SRR8749029	MeJA induced 9h	0.300
SRR8749030	Uninduced	0.658
SRR8749031	Uninduced	0.263
SRR8749032	Uninduced	0.361

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.789
SRR8400027	Control - Root	2.998