Gene detail

Gene detail information of Glyur000011s00000730

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19330.2	2.00E-93
NR	XP_007136571.1	3.18E-159	hypothetical protein PHAVU_009G056200g [Phaseolus vulgaris]
trEMBL	tr\|V7ATC3\|V7ATC3_PHAVU	1.00E-159	Uncharacterized protein {ECO:0000313\|EMBL:ESW08565.1}

Sequence

Transcript Sequence

>Glyur000011s00000730.1
CTCTTTATTAAGACACGGAGAAAGAGATGCATTTCCAGGACCAGCTCTCTCCGGGCGCATGATTAAAGAGCCCACCCTCCCTGTATGACGTGGCAGTCATCCATTGGCACATTTCGTCTCGTCGGGATTCATACCAACACGCCAATAAACGATACCAGTCACTCTCACACTCATTTTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTCAATCTGTGTTTTTCTCTCTGCAGAATTTCCCAAATTTCTTCTCTATCCTATCTCCCCTGCTCCTGAAACCTGCACATTCATCACCGGCAATGCACGATCTTCCGTACGAATGCAATTTCGATATTTGATNTAATCTGCGAGGTTTTCTAATTGGGCGGCTAATTAAATTGGAAAAATGCTTGAGGCAATGGAAAGTTCCGTCAATGGTGGCTTCTCACAGTTGCAGAGCTGTGGGGATAGCAGCGAGGAGGAGCTATCAGTGCTCCCTCGTCACACCAAGGTGGTTGTAACTGGAAACAACCGTACCAAATCGGTGCTCGTTGGTCTCCAAGGCGTGGTTAAGAAAGCCGTTGGACTAGGCGGGTGGCATTGGCTGGTTCTTACAAATGGTATTGAAGTGAAGCTACAGAGGAATGCTCTTAGTGTGATTGAAGCACCCACCGGTAACGAGGAAGATGATGACCTTGAATTTGAAAATATGCAATGGAATGGATCAGATATGGCATCGGACGACACACAGAAGTCCCACAAATCGAGGCATAGAATGCATAGATCATTGGGATCATCTCACAAGACCATGAGTAGGTCCTTCTCTGGTGATTCACAGTCTAAGGGGTCCGTTTCTATGCCTCATGGGTCCACGAAGGTTGACTTGAGCAAACTTGAAATGGCTGCATTGTGGAGATATTGGCGACATTTTAATCTTGTTGATGCCGTCCCAAACCCATCAAAAGAGCAGCTAGTAGATGTTGTCCAGAGGCATTTCATGTCCCAGCAAATGGACGAGTTGCAGGTAATCGTGGGATTTGTCCAAGCCGCAAAGAGGCTCAAGACTGTGTGCAAATGAGAAGGGATCGTGAAGTGAGAAATGATGCGACATTTTAAGTTATAATATGTCTATGCTAACAGAGATAATGTATCTAATATCCACTTCCCTTCGTACTATGTAACATAATTATCCGTGAATTGTATCTCTCTGATATAGTATTAGGTTAGTAGTTCGAGTTTATAGAGGTTCTGACTCTTTTGTAGCCAACCCAGTTATGTAGATATATATGTGACCTTGCAACTGGATCGTTAGGGAAAGTCTCCACGGCTTTCTTTCCTAAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	627676	631356	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000730.1	PF13867.1	SAP30_Sin3_bdg	163	216	3.60E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.617
SRR1783600	control	21.489
SRR1783602	moderate drought stress	22.291
SRR1811619	moderate drought stress	22.123

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.493
DRR006520	Root Summer glycyrrhizin high producing strain	31.637
DRR006521	Root Winter glycyrrhizin high producing strain	11.245
DRR006522	Root Winter glycyrrhizin high producing strain	10.985
DRR006523	Root Summer glycyrrhizin low producing strain	39.493
DRR006524	Root Summer glycyrrhizin low producing strain	39.934
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.496
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.315

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.466
SRR2868004	Drought Stress (root)	32.256
SRR2967015	Control (root)	43.377

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.523
SRR9715740	Leaf	9.589
SRR9715741	Leaf	10.644
SRR9715739	Root	46.855
SRR9715742	Root	29.396
SRR9715743	Root	34.508

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.012
SRR8749028	MeJA induced 9h	14.140
SRR8749029	MeJA induced 9h	10.328
SRR8749030	Uninduced	3.383
SRR8749031	Uninduced	1.053
SRR8749032	Uninduced	2.687

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.575
SRR8400027	Control - Root	74.924