Gene detail

Gene detail information of Glyur000011s00000728

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75000.1	4.00E-83	GNS1/SUR4 membrane protein family
NR	XP_004501043.1	9.69E-173	PREDICTED: elongation of fatty acids protein A-like [Cicer arietinum]
Swissprot	tr\|Q9SYY4\|ELO3L_ARATH	2.00E-109	Elongation of fatty acids protein 3-like
trEMBL	tr\|A0A072V432\|A0A072V432_MEDTR	5.00E-168	GNS1/SUR4 membrane family protein {ECO:0000313\|EMBL:KEH36133.1}

Sequence

Transcript Sequence

>Glyur000011s00000728.1
ATGCAAGAAATCATCAACACGAAGTCACAAACACATTTTATTACATCCTACGTAACGGAGGAGCTGAAGTATTGGCTATTAGATCACCCGTCGATCGTATCGTTCCGTTGGAGTCCCACCCAATCATGGGGCTCCACGTGGTGGTTCCTCATCTCAGCAATCTCCTTCTACNTCGCCGCCGCAGTAACCCTCCACGTCATCCTCAAACTCTGCCGCCGCCGCCGTCCCGTCCCTTTGGGTCCCCTTCCGGCGGTTCACAGCCTCGCCATGTCCGTAATCTCCGTAACCATATTCATCGGCATGCTCTTCTCCGCCGAAGCTGAGGTTCGGGACACACGGTGGCTCTGGCAACGCACCCGAACCACACCGTTCGAGTGGTTGCTCTGTTTCCCACTCGGTATCCGTCCCTCTGGCCGTGTCTTCTTCTGGTCCTACGCCTTCTACCTCTCTCGCTACCTCCACATGTTGCGGACTTTCTTTGTCGTTTTGCGTCATCGGAAGTTGTCGTTTTTCAGGCTTTTCAACAACTCGATTTTCCTCGTCATGTCGTTCCTCTGGCTCGAGTTCTCACAGTCCCTTCNGGTTTTGGCCATATTGTTTTCCACGTCGGTTTGTTCCGTCGTGTATGGGTACCGTTTCTGGGTACAAATTGGGTTGCCCTGTAGAAAGCCGTTTCCTTTCTCAGGGAACGTTCACTTGGTTCTGTTGGGTTGCAACTTGGCGTGCCACGCTGGCGTGCTCTCGTTGCATTACAAGAGAGGAGGGTGTAACGGAATCGGCGCGTGGGTTTTTAACTCTGTGTTGCATGTTTTCATTCTTTTGCACTTCTTGAAGTCCTATGTGAAAACGCACNGGCAAGAAAAGAAGGTTACCGCCTCCACCGGTAATTGCTCTTCTTCCTCCAAAGGCGAGGACGACTCGGCTAAGTCTTCATCAAGACATGGTAATGCCAAGTCAACGTTGAGGTTTTTATCGTTTGAGGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	602335	603321	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000728.1	PF01151.13	ELO	45	289	4.70E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.114
SRR1783600	control	3.148
SRR1783602	moderate drought stress	4.745
SRR1811619	moderate drought stress	4.512

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.226
DRR006522	Root Winter glycyrrhizin high producing strain	0.221
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.974
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.778

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.780
SRR2868004	Drought Stress (root)	5.685
SRR2967015	Control (root)	2.425

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.320
SRR9715740	Leaf	2.326
SRR9715741	Leaf	2.940
SRR9715739	Root	2.073
SRR9715742	Root	1.722
SRR9715743	Root	2.361

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.432
SRR8749028	MeJA induced 9h	2.739
SRR8749029	MeJA induced 9h	6.481
SRR8749030	Uninduced	4.135
SRR8749031	Uninduced	27.213
SRR8749032	Uninduced	34.635

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.144
SRR8400027	Control - Root	3.868