Gene detail information of Glyur000011s00000724 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50770.1 | 5.00E-35 | calmodulin-like 41 |
| NR | XP_003528198.1 | 3.71E-80 | PREDICTED: probable calcium-binding protein CML41-like [Glycine max] |
| COG | YP_001866396.1 | 5.00E-10 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q8L3R2|CML41_ARATH | 3.00E-50 | Probable calcium-binding protein CML41 |
| trEMBL | tr|I1K7U5|I1K7U5_SOYBN | 1.00E-80 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G03780.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00011 | 583972 | 584616 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000011s00000724.1 | PF13499.1 | EF-hand_7 | 75 | 135 | 1.60E-12 |
| Glyur000011s00000724.1 | PF13833.1 | EF-hand_8 | 162 | 211 | 1.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.159 |
| SRR1783600 | control | 4.598 |
| SRR1783602 | moderate drought stress | 3.963 |
| SRR1811619 | moderate drought stress | 4.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.168 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.332 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.199 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.342 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.616 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.534 |
| SRR2868004 | Drought Stress (root) | 0.617 |
| SRR2967015 | Control (root) | 1.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.279 |
| SRR9715740 | Leaf | 4.787 |
| SRR9715741 | Leaf | 1.762 |
| SRR9715739 | Root | 7.808 |
| SRR9715742 | Root | 2.749 |
| SRR9715743 | Root | 3.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.263 |
| SRR8749028 | MeJA induced 9h | 0.312 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.069 |
| SRR8749031 | Uninduced | 0.122 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.057 |
| SRR8400027 | Control - Root | 0.665 |