Gene detail

Gene detail information of Glyur000011s00000723.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G23770.1	4.00E-89	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
NR	KHN12737.1	0	Leucine-rich repeat receptor protein kinase EXS [Glycine soja]
COG	YP_003640725.1	2.00E-10	serine/threonine protein kinase [Thermincola potens JR]
Swissprot	tr\|O64825\|LYK4_ARATH	3.00E-102	LysM domain receptor-like kinase 4 (Precursor)
trEMBL	tr\|K7MNT9\|K7MNT9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G36630.2}

Sequence

Transcript Sequence

>Glyur000011s00000723.1
ATGGATCATACCTCGTTTCTCCTCATTCTTTTCGCACAAATTAGCTTTCTTCTAACTCTATCTTCAAGTGGCAGCAGGGCACAGCAGAATTACTCTGGAAATTCAATAATGAGTTGCAACAACAACGACACGATGGGGCCATCCCCAGCGTTCCTCTACACCTGCAACGGCCTCCACAACTCCTGTCTCACCTTCCTCATCTTCAAATCCCAACCTCCTCACAACTCCACAGTAACAATCTCCAACCTCACATCGTCAAACCCACAAGAGCTTGCCAAAATCAACAACGCCACACTGCTCACAGTGTTCCCCACAGGCAAAGAGGTAATTGTCCCTGTGAATTGTTCCTGTAGTACTCCGTCGAGCTGGGATTACTACTACTACTACTACTACCAAGCCGAAACCAAATATGTTCTGCCCCCAAAATCAACGTATTTCACGGTAGCAAACAATACTTATCAGGGGTTGTCTACATGTGATTCTCTCGTGCGTGCCAATCCATATGGGGTNCTTGATTTGTTACCCGGCATGGAATTGCACGTGCCACTCAGGTGCGCTTGTCCAACGAGGCACCAACACCAAGCAACGAATAATGGCACCAACACTAAGTATTTACTCACTTACCCTGTGAATTGGGGTGATAACATTTCTTATCTTGCCGAAAGATTCAATGTTTCTGCGGGTAGTTTAGTTGAGGCCAATAGTTTTTCCTCCGAAAATCAAACCCTTTCTCCATTCACAACGGTTCTGATTCCGTTGCCAAGTGAACCCACGAGTTCAATGACCAAAATAGTTCATTATGATCAACCAACAACCACTNCAACCTCACCTCCTCTTAAGAGTAAGACAAGAAGAAAACTCCTCCTTGTTGTAGCAGCCACCACAGGGAGCTTCTTCATACTTGTTCTCTGTGTCATTTTATCTGTTCTGTTTCTTCTCAGAAGAAAGAGAACAGAAAGGTTAATCTTCAAGCGAGGTTCAAAAGGTAATAAAACTATCCCGGTGTCTTCAGAAGACATCCGTGGGGAGATAGCATGCATTGATGACAATCTCTCCAGAGTGTACAGGTTTGAGGAAATTAAGGAAGCCACTGAGAATTTCAGTTCAGGGAATAGGATAAAAGGATCTGTTTATCGTGGGGTATTTGGTAGTGATCATGACAAAGATCACATCTTGGCCATCAAAAAGATGAAATCAGATGCGTCCAAGGAAGTGAATTTGCTAGGAAAAATCAACCATTTCAACCTGATAAAGCTGAAAGGCTACTGTAAAAACCATGATGATGGTTTGTTCTGTCTTGTTTTTGAATACATGGAAAATGGGTCATTAAGAGAATGGCTTAATGGTAATAAAAGCGGGTCCACCACAGAGGAGCACCAGAGTTGGGAAAAGAGGGTCCAGATTGCTCTAGACATTGCAAATGGGCTTGATTATCTTCACAACTTCACAGAGCCTTGCTATGTGCACAAGGGTATTAGCACTGACAACATTCTACTCAACGGAGATCTAAGGGCCAAGATATCGAATTTTTCCCTTGCTGAGGAATCAGAGAGGGAAATAATGAANGTGGCTTCCAAATTGGATGTCTACGCTTTTGGAGTGGTGCTGCTGGAATTGATCACGGGTAAAGAAGATTCTAGTACTATGGTGCAAGATGGAATTAGAGAAGTAATGCTTGATGGTAAAGATGATGTTGAAGAGAGATTCAGATTGTTCATTGATCCTCGCCTCAGTACTGGAGATAGCGGGGGGAAAGTAGTATTTGGTCTTGAGCTAGTGAGACTGAGTCTAGCATGCTTAATGGAAGAACCTTCAAGGAGACCAAACATGGCAGAGAAAGGGGACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	580105	582301	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000723.1	PF07714.12	Pkinase_Tyr	375	517	5.40E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.079
SRR1783600	control	0.099
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.058
DRR006520	Root Summer glycyrrhizin high producing strain	0.058
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.452
DRR006524	Root Summer glycyrrhizin low producing strain	0.452
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.251
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.250

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.535
SRR2868004	Drought Stress (root)	2.028
SRR2967015	Control (root)	3.815

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.167
SRR9715740	Leaf	0.103
SRR9715741	Leaf	0.055
SRR9715739	Root	0.209
SRR9715742	Root	0.264
SRR9715743	Root	0.199

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.570
SRR8749028	MeJA induced 9h	0.953
SRR8749029	MeJA induced 9h	0.544
SRR8749030	Uninduced	2.036
SRR8749031	Uninduced	0.836
SRR8749032	Uninduced	0.151

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.062
SRR8400027	Control - Root	0.781