Gene detail information of Glyur000011s00000717 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20540.1 | 2.00E-90 | mitochondrial editing factor 21 |
| NR | XP_004501051.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cicer arietinum] |
| Swissprot | tr|Q9FJY7|PP449_ARATH | 6.00E-119 | Pentatricopeptide repeat-containing protein At5g66520 |
| trEMBL | tr|G7L807|G7L807_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:AET04364.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00011 | 553821 | 555422 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000011s00000717.1 | PF13041.1 | PPR_2 | 75 | 123 | 7.80E-09 |
| Glyur000011s00000717.1 | PF01535.15 | PPR | 149 | 172 | 0.0017 |
| Glyur000011s00000717.1 | PF12854.2 | PPR_1 | 175 | 204 | 1.40E-08 |
| Glyur000011s00000717.1 | PF01535.15 | PPR | 210 | 236 | 0.0007 |
| Glyur000011s00000717.1 | PF13812.1 | PPR_3 | 284 | 308 | 0.54 |
| Glyur000011s00000717.1 | PF13041.1 | PPR_2 | 309 | 356 | 7.50E-09 |
| Glyur000011s00000717.1 | PF01535.15 | PPR | 384 | 408 | 0.014 |
| Glyur000011s00000717.1 | PF01535.15 | PPR | 453 | 479 | 0.043 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.018 |
| SRR1783600 | control | 2.104 |
| SRR1783602 | moderate drought stress | 2.322 |
| SRR1811619 | moderate drought stress | 2.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.272 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.108 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.107 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.148 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.286 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.160 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.852 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.205 |
| SRR2868004 | Drought Stress (root) | 2.923 |
| SRR2967015 | Control (root) | 3.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.738 |
| SRR9715740 | Leaf | 1.509 |
| SRR9715741 | Leaf | 1.218 |
| SRR9715739 | Root | 4.808 |
| SRR9715742 | Root | 3.599 |
| SRR9715743 | Root | 3.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.007 |
| SRR8749028 | MeJA induced 9h | 5.608 |
| SRR8749029 | MeJA induced 9h | 7.681 |
| SRR8749030 | Uninduced | 1.358 |
| SRR8749031 | Uninduced | 0.461 |
| SRR8749032 | Uninduced | 1.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.451 |
| SRR8400027 | Control - Root | 3.806 |